Your message dated Mon, 19 Oct 2020 22:10:11 +0000
with message-id <e1kudm3-0005aj...@fasolo.debian.org>
and subject line Bug#968716: fixed in shasta 0.5.1-1
has caused the Debian Bug report #968716,
regarding ITP: shasta -- nanopore whole genome assembly (binaries and scripts)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
968716: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968716
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: shasta -- nanopore whole genome assembly (binaries and scripts)
Package: wnpp
Owner: Shayan Doust <he...@shayandoust.me>
Severity: wishlist
* Package name : shasta
Version : 0.5.1
Upstream Author : Chan Zuckerberg Initiative
* URL : https://github.com/chanzuckerberg/shasta
* License : Expat
Programming Lang: C++
Description : nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long
read assembler is to rapidly produce accurate assembled sequence using
as input DNA reads generated by Oxford Nanopore flow cells.
.
Computational methods used by the Shasta assembler include:
.
* Using a run-length representation of the read sequence. This makes
the assembly process more resilient to errors in homopolymer
repeat counts, which are the most common type of errors in Oxford
Nanopore reads.
.
* Using in some phases of the computation a representation of the read
sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
.
Shasta assembly quality is comparable or better than assembly quality
achieved by other long read assemblers.
.
This package contains the executable binaries (tools) and
accommodating scripts.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/shasta
--- End Message ---
--- Begin Message ---
Source: shasta
Source-Version: 0.5.1-1
Done: Shayan Doust <he...@shayandoust.me>
We believe that the bug you reported is fixed in the latest version of
shasta, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 968...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shayan Doust <he...@shayandoust.me> (supplier of updated shasta package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 20 Aug 2020 16:47:28 +0000
Source: shasta
Binary: python3-shasta python3-shasta-dbgsym python3-shasta-doc shasta
shasta-dbgsym
Architecture: source amd64 all
Version: 0.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Shayan Doust <he...@shayandoust.me>
Description:
python3-shasta - nanopore whole genome assembly (dynamic library)
python3-shasta-doc - nanopore whole genome assembly (documentation)
shasta - nanopore whole genome assembly (binaries and scripts)
Closes: 968716
Changes:
shasta (0.5.1-1) unstable; urgency=medium
.
* Initial release (Closes: #968716)
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--- End Message ---
