Your message dated Tue, 28 Oct 2025 18:00:34 +0000
with message-id <[email protected]>
and subject line Bug#1109466: fixed in python-modelcif 1.5-1
has caused the Debian Bug report #1109466,
regarding ITP: python-modelcif -- handles mmCIF and BinaryCIF files with
ModelCIF extension
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1109466: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1109466
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <[email protected]>
X-Debbugs-Cc: [email protected], [email protected]
* Package name : python-modelcif
Version : 1.4
* URL : https://github.com/ihmwg/python-modelcif
* License : MIT/X
Programming Lang: Python
Description : handles mmCIF and BinaryCIF files with ModelCIF extension
The macromolecular Crystallographic Information File format is a standard
for the representation and description of large molecular structures like
proteins and/or nucleic acids.
.
This package provides a mechanism to describe the generation of a
theoretical model (for example, via comparative or homology model)
a set of Python objects. This includes, if applicable
* the templates(s) used for the modeling;
* the alignment between the template(s) and target sequence;
* the protocol used to generate models, such as template search,
modeling, and model selection;
* the actual coordinates of output models;
* grouping of multiple models;
* quality scores for models and/or alignments.
.
Once created, this set of Python objects can be written to an
mmCIF file that is compliant with the ModelCIF extension to the
PDBx/mmCIF dictionary, suitable for deposition in a repository such as
ModelArchive. The files can be viewed in any regular PDBx mmCIF viewer,
such as UCSF ChimeraX (although most viewers to date will only show
the model coordinates, not the ModelCIF-specific metadata).
.
This package leverages functionality provided by the python-ihm
package, which functions similarly, building a Python hierarchy
and then reading/writing mmCIF files. (However, python-ihm is used
for integrative models, and reads or writes files compliant with the
integrative/hybrid modeling extension dictionary.) In particular, many
python-ihm classes and modules are used in this library, for example
the ihm.Grant and ihm.Citation classes for handling grant or citation
information, or the ihm.dictionary module for validating files against
the mmCIF dictionary itself.
The package will soon appear on the Debian Med salsa repository.
--- End Message ---
--- Begin Message ---
Source: python-modelcif
Source-Version: 1.5-1
Done: Steffen Moeller <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-modelcif, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <[email protected]> (supplier of updated python-modelcif
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 03 Oct 2025 16:07:11 +0100
Source: python-modelcif
Binary: python3-modelcif
Architecture: source all
Version: 1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Steffen Moeller <[email protected]>
Description:
python3-modelcif - handles mmCIF and BinaryCIF files with ModelCIF extension
Closes: 1109466
Changes:
python-modelcif (1.5-1) unstable; urgency=medium
.
* Initial release. (Closes: #1109466)
.
[ Thorsten Alteholz ]
* d/copyright: docs/* directly assigned to Ben
Checksums-Sha1:
d008a49e11e4d7e966854ceadc0cb25f3ca2dacd 2079 python-modelcif_1.5-1.dsc
ced8bb26d199c6a51f502ce7bdd3622b40e61842 92318 python-modelcif_1.5.orig.tar.gz
46ccf27ccecb86e4ee2e653657b5dca09caed3c8 3788
python-modelcif_1.5-1.debian.tar.xz
7a6050bbc005b6b4ec0ba9a5e7208a9fd0333dbf 7154
python-modelcif_1.5-1_amd64.buildinfo
d37440f81959b068d2e53fc60072f0810072bc9b 40580 python3-modelcif_1.5-1_all.deb
Checksums-Sha256:
b03101a148e937399e2ce3efac0870a5330985bc31e71ae0bd873ce013bf58b1 2079
python-modelcif_1.5-1.dsc
d8cad889a2e7d977e2e1b390288fdad2aae07c84b1f323f76fe1ea7ac74acc9c 92318
python-modelcif_1.5.orig.tar.gz
787208f8f947a1422abf7f3e0ea574b2cab7d0f29a8e25f4e33f36dee0b74163 3788
python-modelcif_1.5-1.debian.tar.xz
20f0081a1556bd0ffcca5af4313fb96b73e3dab7dd4d1c8b4f16e7870a146292 7154
python-modelcif_1.5-1_amd64.buildinfo
286af7ef413c0e4c6c0a494abfc9cfc1da23d4a82d598adf77bdfaf7c8d4aab4 40580
python3-modelcif_1.5-1_all.deb
Files:
3e130f85392a2e62941f7fbb4cb9589f 2079 science optional
python-modelcif_1.5-1.dsc
a29d0b62985a66a8ed73148cea2a8efd 92318 science optional
python-modelcif_1.5.orig.tar.gz
802d8bec5e6d9a97d8bdc7a72aeed39b 3788 science optional
python-modelcif_1.5-1.debian.tar.xz
0c4c46f432fda06e22f92f6fc7f505fd 7154 science optional
python-modelcif_1.5-1_amd64.buildinfo
f64336f0c8e4a8f525c007012cef0c5b 40580 python optional
python3-modelcif_1.5-1_all.deb
-----BEGIN PGP SIGNATURE-----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=qBeJ
-----END PGP SIGNATURE-----
pgpW83Dr95RWM.pgp
Description: PGP signature
--- End Message ---
