Sebhtml wrote: > KmerAcademy is a place where all k-mer must transit before making it > to the GridTable. Those observed only once remain in the > KmerAcademy. This academy is then destroyed.
YES! Thank you for implementing this, I expect that this should make a substantial impact on memory usage, and the quality of the output assembly. Just to explain my expectations, one of my friends worked at the National archives in New Zealand and did a study on access counts for things that were stored in the library. He found that items that hadn't been accessed in the last five years were extremely unlikely to ever be accessed again -- basically, things that are only rarely accessed are a really good candidate for being stored in the bottom of a locked filing cabinet stuck in a disused lavatory with a sign on the door saying 'Beware of the leopard'. I've since had a suspicion that this phenomena applies to many different areas, particularly those involving databases, and statistics on the Kmer academy should help me to work out if this is also true for genome assembly. Regards, -- David Eccles ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense.. http://p.sf.net/sfu/splunk-d2d-c1 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
