Hello Francesco, What is the content of the standard output and standard error ?
> ________________________________________ > De : Francesco Vezzi [[email protected]] > Date d'envoi : 23 août 2011 09:15 > À : Sébastien Boisvert > Objet : Ray behavior > > Dear Sebastien > I`m using Ray in order to assembly an high coverage of the olive genome > (~50X) composed mainly by Illumina reads and some unpaired 454 reads. > I lunched Ray a week ago on our cluster composed by 10 nodes with 8 cores > each connected through infinyband. On a dataset 4 times smaller, using the > same hardware, I was able to obtain an assembly in 3 days with Abyss. > > The strange behavior is the fact that after one week the folder where the > program is running contains only 3 files: RayOutput.NetworkTest.txt, > RayOutput.RayCommand.txt and, RayOutput.RayVersion.txt > Moreover, while all the used cpus are running at 100%, the amount of used RAM > in the nodes is exceptionally low (less than 5GB RAM per node). > > In your experience, is this behavior normal or the program is likely to be > stuck in some deadlock? > > Best > Francesco > > > Sébastien Boisvert http://github.com/sebhtml/ray ------------------------------------------------------------------------------ Get a FREE DOWNLOAD! and learn more about uberSVN rich system, user administration capabilities and model configuration. Take the hassle out of deploying and managing Subversion and the tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
