Hello, Ray 1.7 was released on 2011-10-03, almost 6 months ago.
We are proud to release Ray 2.0-Release Candidate 5. A release candidate is usually something quite stable. Summary of changes: New features: - A obvious peak in the coverage distribution is not required anymore. - Ray works on meta-genomes. - Reference sequences can be provided to do k-mer counting with a colored de Bruijn graph. - A taxonomic tree can be provided to perform taxonomic profiling using a distributed de Bruijn graph with virtual coloring. - A new output file contains contig neighbours. - A new directory called BiologicalAbundances contains biological abundances. - Ray can be compiled with CMake. - A header was added for scaffold links. - Contig are identified if reference sequences are provided via -search. - The speed is now shown in each step (like assembling at 5000 k-mers/second). - A new option can enable message routing for large jobs. - The algorithm that computes assembly seeds was modified to avoid assembly errors at this point. - Expiry positions for sequence reads are improved. - The file ElapsedTime contains the elapsed time. - Several options were added to debug assemblies. Code refactoring: - Test suites are in a distinct project. - Ray was ported to a new plugin architecture called RayPlatform. - The code that helps with content creation is now in RayPlatform. Ray ships with this. - The seed extension code was refactored. Tests: - New tests for peak calling for pairs of sequences. Bug fixes: - A bug that generated a segmentation fault in the virtual communicator in some very rare cases. To download Ray 2.0-Release Candidate 5: http://sourceforge.net/projects/denovoassembler/files/Ray-2.0-Release_Candidate_5/ Sébastien ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
