thanks, it now compiled fine
best,
steve
2012/4/5 Sébastien Boisvert <[email protected]>
> This is a known bug in the Intel compiler.
>
>
> Compile Ray with:
>
>
> make PREFIX=Build INTEL_COMPILER=y
>
>
> This will add these flags to the compiler:
>
> -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
>
> and will set the compiler to
>
> mpiicpc
>
>
>
>
>
>
> On Wed, 2012-04-04 at 18:41 -0400, Steven E Massey wrote:
> > Hi Sebastien
> >
> > I was trying to compile the ray assembler on the head node of a
> > cluster, but I got the folllowing error message:
> >
> > make PREFIX=ray-build
> > In file included
> > from /opt/intel/impi/4.0.1.007/intel64/include/mpi.h:1173,
> > from code/communication/MessagesHandler.h:25,
> > from code/core/OperatingSystem.h:28,
> > from code/communication/MessageProcessor.cpp:24:
> > /opt/intel/impi/4.0.1.007/intel64/include/mpicxx.h:45:2: error: #error
> > "SEEK_SET is #defined but must not be for the C++ binding of MPI.
> > Include mpi.h before stdio.h"
> > /opt/intel/impi/4.0.1.007/intel64/include/mpicxx.h:49:2: error: #error
> > "SEEK_CUR is #defined but must not be for the C++ binding of MPI.
> > Include mpi.h before stdio.h"
> > /opt/intel/impi/4.0.1.007/intel64/include/mpicxx.h:54:2: error: #error
> > "SEEK_END is #defined but must not be for the C++ binding of MPI.
> > Include mpi.h before stdio.h"
> > make: *** [code/communication/MessageProcessor.o] Error 1
> >
> >
> > do you have an ideas how to fix?
> >
> > many thanks
> >
> > steve
> >
> > --
> > Steven E Massey
> > Assistant Professor Bioinformatics
> > Biology Department
> > University of Puerto Rico - Rio Piedras
> > PO Box 23360
> > San Juan PR 00931
> >
> > Tel: 7875894859 (Cell), x7798 (Office)
> > Office FB 246, Lab NCN 343B
> > E-mail: [email protected]
> > Web-page: www.scanmoment.org/masseybioinformatics-UPR.html
> >
>
>
>
--
Steven E Massey
Assistant Professor Bioinformatics
Biology Department
University of Puerto Rico - Rio Piedras
PO Box 23360
San Juan PR 00931
Tel: 7875894859 (Cell), x7798 (Office)
Office FB 246, Lab NCN 343B
E-mail: [email protected]
Web-page: www.scanmoment.org/masseybioinformatics-UPR.html
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