Hello! I've run into a roadblock.
If I run the following command in the background, the assembler seems to
stall, with the last output being the citation for the assembler
mpirun -hostfile hostfile.actinode34 -np 48 -stdin /dev/null
/home/krobison/packages/Ray-v2.0-ReleaseCandidate5/Ray -i part.8.fasta -o
ray.part.8.actinode34.c 1> ray.part.8.actinode34.c.out 2>
ray.part.8.actinode34.c.err
Where hostfile.actinode34 reads:
actinode03 slots=24
actinode04 slots=24
if instead I run with a hostfile with only one host (either one of them)
and -np 24, but otherwise the same command line, the assembler seems to be
off and running.
My .bashrc has
export PATH=$PATH:/act/openmpi/gnu/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/act/openmpi/gnu/lib
(the cluster vendor put the code in /act)
Any suggestions for what might be triggering this behavior?
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Denovoassembler-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
