Hello
I see that many studies at ENA have 454 GS FLX Titanium paired reads,
but most of the times the files are fastq1 fastq2 and fastq3
how should i compine these files as an input in Ray?
Like: -p fastq1 fastq2
-p fastq2 fastq3
something like that could work?
For example at this study : http://www.ebi.ac.uk/ena/data/view/SRP012081
they have:
Instrument Model Library Layout Run Read Count Run Base Count
Illumina HiSeq 2000 PAIRED 12,794,66
42Gb Fastq file#1
Illumina HiSeq 2000 PAIRED 12,794,66
42Gb Fastq file#2
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#1 <-
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#2 <-
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#3 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#1 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#2 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#3 <-_
how should I set Ray for them?
Also how can I understand if a library is shortjumpimg or longjumping?
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Denovoassembler-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
