Hello, You can try a k-mer length of 21 for GA II.
The HiSeq uses the TruSeq chemistry, which has a lower error rate. So 31 is fine. nikos ioannidis a écrit : > Hello, i want to ask if you use any > specific k-mer with illumina genome analyzer II, > because you mentioned that with illumina high seq > you always use 31 > > > Thank you ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
