1- SYSINFO :
      Java Version : 1.5.0_11-b03
      os version : 5.1 Windows XP
      For derby, I'm using *10.3.2*
2- I'm not be able to restore from the corrupted database, the full trace
is:

---------------------------------------------------------------
2008-04-07 14:41:59.109 GMT:
 Booting Derby version The Apache Software Foundation - Apache Derby -
10.3.2.1 - (599110): instance c013800d-0119-2956-0e45-000000162900
on database directory
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena
  


2008-04-07 14:41:59.297 GMT:
Shutting down instance c013800d-0119-2956-0e45-000000162900
----------------------------------------------------------------
2008-04-07 14:41:59.484 GMT Thread[ModalContext,6,main] Cleanup action
starting
java.sql.SQLException: Failed to start database
'C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena',
see the next exception for details.
        at 
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown
Source)
        at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
        at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown 
Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
        at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown Source)
        at org.apache.derby.jdbc.Driver30.getNewEmbedConnection(Unknown Source)
        at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
        at org.apache.derby.jdbc.EmbeddedDriver.connect(Unknown Source)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionManagerImpl.connect(ConnectionManagerImpl.java:185)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionInfoImpl.connect(ConnectionInfoImpl.java:127)
        at
org.eclipse.wst.rdb.connection.internal.ui.wizards.shared.NewCWJDBCPage$2.run(NewCWJDBCPage.java:897)
        at
org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:113)
Caused by: java.sql.SQLException: Error copying file (during backup) from
C:\Documents and Settings\bassel\Desktop\Rafi test\db\Arena\BACKUP.HISTORY
to
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena\BACKUP.HISTORY.
        at 
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown
Source)
        at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown 
Source)
        ... 10 more
Caused by: ERROR XSRS5: Error copying file (during backup) from C:\Documents
and Settings\bassel\Desktop\Rafi test\db\Arena\BACKUP.HISTORY to
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena\BACKUP.HISTORY.
        at org.apache.derby.iapi.error.StandardException.newException(Unknown
Source)
        at
org.apache.derby.impl.store.raw.RawStore.restoreRemainingFromBackup(Unknown
Source)
        at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
        at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown
Source)
        at
org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown
Source)
        ... 10 more
============= begin nested exception, level (1) ===========
java.sql.SQLException: Error copying file (during backup) from C:\Documents
and Settings\bassel\Desktop\Rafi test\db\Arena\BACKUP.HISTORY to
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena\BACKUP.HISTORY.
        at 
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown
Source)
        at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown 
Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown 
Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
        at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown Source)
        at org.apache.derby.jdbc.Driver30.getNewEmbedConnection(Unknown Source)
        at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
        at org.apache.derby.jdbc.EmbeddedDriver.connect(Unknown Source)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionManagerImpl.connect(ConnectionManagerImpl.java:185)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionInfoImpl.connect(ConnectionInfoImpl.java:127)
        at
org.eclipse.wst.rdb.connection.internal.ui.wizards.shared.NewCWJDBCPage$2.run(NewCWJDBCPage.java:897)
        at
org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:113)
Caused by: ERROR XSRS5: Error copying file (during backup) from C:\Documents
and Settings\bassel\Desktop\Rafi test\db\Arena\BACKUP.HISTORY to
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena\BACKUP.HISTORY.
        at org.apache.derby.iapi.error.StandardException.newException(Unknown
Source)
        at
org.apache.derby.impl.store.raw.RawStore.restoreRemainingFromBackup(Unknown
Source)
        at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
        at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown
Source)
        at
org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown
Source)
        ... 10 more
============= end nested exception, level (1) ===========
============= begin nested exception, level (2) ===========
ERROR XSRS5: Error copying file (during backup) from C:\Documents and
Settings\bassel\Desktop\Rafi test\db\Arena\BACKUP.HISTORY to
C:\eclipse3.2\workspace\ANM2.3_MBR_DERBY\automatedbuild\build\tmp\Arena\db\Arena\BACKUP.HISTORY.
        at org.apache.derby.iapi.error.StandardException.newException(Unknown
Source)
        at
org.apache.derby.impl.store.raw.RawStore.restoreRemainingFromBackup(Unknown
Source)
        at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown
Source)
        at 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown
Source)
        at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
        at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
        at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown 
Source)
        at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
        at 
org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown
Source)
        at
org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown
Source)
        at
org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown
Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown 
Source)
        at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
        at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown Source)
        at org.apache.derby.jdbc.Driver30.getNewEmbedConnection(Unknown Source)
        at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
        at org.apache.derby.jdbc.EmbeddedDriver.connect(Unknown Source)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionManagerImpl.connect(ConnectionManagerImpl.java:185)
        at
org.eclipse.wst.rdb.internal.core.connection.ConnectionInfoImpl.connect(ConnectionInfoImpl.java:127)
        at
org.eclipse.wst.rdb.connection.internal.ui.wizards.shared.NewCWJDBCPage$2.run(NewCWJDBCPage.java:897)
        at
org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:113)
============= end nested exception, level (2) ===========
Cleanup action completed


I'll tell you what also did:

- As I know, as soon as the all the database connections got closed, derby
is automatically shutdown, but even though, I created a shutdown Hook in
order to regularly shutdown the database to avoid any alive transaction or
resource, and now derby is regularly shutdown.

- I also read about durability and IO flushing problem, so because of that,
I’m doing check point before closing the database, by calling
SYSCS_UTIL.SYSCS_CHECKPOINT_DATABASE(), to make sure that all cached data
are already flushed to the disk, I can't do more!!

- I’m using Hibernate 3.1.rc3 as an entity library, I’m not talking to derby
directly, I thought that Hibernate is keeping some derby resources alive, so
before shutdown derby, I’m cleaning up the hibernate sessions & connections
 I did debugging on that and I could open the database using cloudscape
after a regular shutdown, means I’m 100% sure that the database has a quite
regular shutdown and there is no resources still there.


- The problem is not happing al the times, it happens in two different
cases:
        A. When I’m trying to do online backup (the db size is only 3 MB !!)
        B. When I restart my Application’s service (I’m using java service 
wrapper
for doing this), you can check it out:
http://wrapper.tanukisoftware.org/doc/english/introduction.html


- OS & hardware: 
I checked it on:
    •    Windows XP professional edition SP 2 , with 2 GB RAM, HP dx6120 ,
Pentium 4, CPU 3.2 GHz
    •  I also checked it on a server, HP ML370, Windows Server 2003.

Note:
I've created another build with (H2) database, it is working fine for me,
but I don’t want to replace such a good database like Derby at any reason,
but our deployment is stooping till we sort this problem out,

So Kindly advice,


Best regards



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