If I maximize a window, it only stretches over the 1024x768-part of the
screen. But I can manually resize it to fit the 1280x1024 screen I
actually have.

This is the relevant part of lspci -vv, but I don't think that will help
since X is behaving correctly:

01:05.0 VGA compatible controller: ATI Technologies Inc Radeon IGP 
330M/340M/350M (prog-if 00 [VGA])
        Subsystem: Compaq Computer Corporation Unknown device 005a
        Control: I/O+ Mem+ BusMaster+ SpecCycle- MemWINV- VGASnoop- ParErr- 
Stepping+ SERR- FastB2B-
        Status: Cap+ 66MHz+ UDF- FastB2B+ ParErr- DEVSEL=medium >TAbort- 
<TAbort- <MAbort- >SERR- <PERR-
        Latency: 64 (2000ns min), Cache Line Size: 64 bytes
        Interrupt: pin A routed to IRQ 10
        Region 0: Memory at 94000000 (32-bit, prefetchable) [size=64M]
        Region 1: I/O ports at 2000 [size=256]
        Region 2: Memory at 90000000 (32-bit, non-prefetchable) [size=64K]
        [virtual] Expansion ROM at 90020000 [disabled] [size=128K]
        Capabilities: [58] AGP version 2.0
                Status: RQ=48 Iso- ArqSz=0 Cal=0 SBA+ ITACoh- GART64- HTrans- 
64bit- FW- AGP3- Rate=x1,x2,x4
                Command: RQ=16 ArqSz=0 Cal=0 SBA+ AGP+ GART64- 64bit- FW- 
Rate=x4
        Capabilities: [50] Power Management version 2
                Flags: PMEClk- DSI- D1+ D2+ AuxCurrent=0mA 
PME(D0-,D1-,D2-,D3hot-,D3cold-)
                Status: D0 PME-Enable- DSel=0 DScale=0 PME-

-- 
X - GDM resolution mismatch after upgrade
https://bugs.launchpad.net/bugs/162628
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Desktop Bugs, which is a bug contact for gdm in ubuntu.

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