To complete on the first point of the initial post (what keys are "seen"
by seahorse), what i've found (it's hidden somewhere on the seahorse
pages at live.gnome.org) is that seahorse will only take into account
keys beginning with id_rsa or id_dsa

I was using a key named id_vpn in my .ssh folder back on Hardy and
everything worked fine. After upgrading to Intrepid, this particular key
was simply ignored by seahorse which wouldn't pop up the askpass dialog
(nor would the keyring dialog appear). I renamed id_vpn and id_vpn.pub
to id_rsa_vpn and id_rsa_vpn.pub and it works fine now. A logout/login
was maybe necessary.

Hope this helps

-- 
seahorse-agent not invoked for second ssh key
https://bugs.launchpad.net/bugs/195908
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