For what it might be worth I noticed, the "Exit" window on this system
now opens BEHIND the active window (Exception: NOT one for a Wine app.)
and other desktop  windows no longer dim when the Exit window opens.
All probably began happening the same time as the Nautilus problem

I've attached a note to bug 317855 since the behavior seems very
similar, though I have a plain Gnome GUI, no Compiz frills.

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nautilus excessive cpu and delay opening directories
https://bugs.launchpad.net/bugs/364838
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