I read the evolution faq for the question 
     Why do I get an error "Summary and folder mismatch, even after a sync"? 
also I recieved the message 
    database disk image is malformed

But I delete all .ibex.index files but it does not work, the problem
stills until I also did what runout  wrote.

The work around for  me was
stop evolution
evolution --force.shutdown 
and 
delete ibex.index files plus folders.db under directory ~/.evolution/mail/local/
restart evolution 

And now I am happily working again without problems.

I hope this helps.

Regards

-- 
database disk image is malformed
https://bugs.launchpad.net/bugs/381164
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