I am noticing the same problem on i368 Karmic.  Restarting gnome-panel
works for me as well.  This has only recently been happening, although,
I'm not sure when it started.  I installed over rather than upgrade, so
the .files shouldn't have any hang overs from 9.04.

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notification area shows wrong icons. erratic behaviour
https://bugs.launchpad.net/bugs/439448
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