I had a similiar problem and I solved it with:

[srydb...@zeus ~]$ echo $SSH_AUTH_SOCK
/tmp/keyring-KXX3Aw/ssh
[srydb...@zeus tmp]$ sudo rm -rf keyring-KXX3Aw/

Maybe the keys are cached there?

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ssh Agent admitted failure to sign using the key on big endian machines
https://bugs.launchpad.net/bugs/201786
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