The home directory is encrypted with ecryptfs, but that does not seem to
be a problem for baobab. I can choose any other directory under the home
directory, and baobab reports correct usage information.

I don't know what .gvfs is. It is something that was set up automatically, I 
don't know which software set it up. It shows up in /proc/mounts like this:
gvfs-fuse-daemon /home/kasperd/.gvfs fuse.gvfs-fuse-daemon 
rw,nosuid,nodev,relatime,user_id=1000,group_id=1000 0 0

Any attempt to access it just produces the same error, this might be due
to a bug in some other component, but I don't know about that.

Regardless of what the reason this mount point cannot be accessed is, it
is a bug that baobab produce incorrect information when started from the
parent directory. It should tell me there are things it cannot access
and proceed to give me information about everything that it can access.

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https://bugs.launchpad.net/bugs/822792

Title:
  Disk Usage Analyzer produce incorrect numbers on home directories

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