David, yes it's the internal microphone/input (Realtek ALC889 on MSI
790GX-G65 motherboard). Pulseaudio seems unaffected to me, see attached
out `pactl list`, and nothing changes plugging headphone jacks.

** Attachment added: "On same system, running Sound setting inside GNOME 
Session (in Italian, sorry)"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-control-center/+bug/1003671/+attachment/3161618/+files/audio-gnome-with-internal.png

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https://bugs.launchpad.net/bugs/1003671

Title:
  [soundnua]: Internal sound card (HDA ATI SB) not showed in Sound >
  Input

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