Public bug reported:

I have seen past bug reports on this issue however it seems to have gone
stale since 10.04. My machine is running Xubuntu 13.04 64-bit and the
problem is with MATLAB R2011a Student Version.

Randomly MATLAB's windows will disappear from the taskbar and the only
way to access them is using ALT+TAB.

** Affects: libwnck (Ubuntu)
     Importance: Undecided
         Status: New

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https://bugs.launchpad.net/bugs/1192688

Title:
  MATLAB's Java windows disappear from the taskbar

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