Bug still exists in 15.10.  It is extremelly annoying.

Possible workaround:

* Install autokey, add to Startup applications. It handles shortcuts using X 
Window System instead of Gnome.
* Add custom scripts to autokey and set shortcuts for them

Keyboard First Layout:
       from subprocess import check_output
       check_output(['gsettings', 'set', 'org.gnome.desktop.input-sources', 
'current', '0'])

Keyboard Second Layout:
      from subprocess import check_output
      check_output(['gsettings', 'set', 'org.gnome.desktop.input-sources', 
'current', '1'])

Works well with XMind. Gedit search input still lose focus on layout
switch.

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https://bugs.launchpad.net/bugs/1244090

Title:
  Pressing any global keyboard shortcut causes temporary loss of focus

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