Hi, I had a similar crash this morning upgrading focal, after trying to
get unattended-upgrades to stop spinning on missing focal-security apt
list files. In this case, I don't use gnome-shell as my desktop
environment, but it still tore down my entire desktop environment and
caused gdm3 to respawn.

I've attached the journalctl log from when I started apt upgrade to when
I successfully re-logged into my i3 session.

** Attachment added: "journalctl.log"
   
https://bugs.launchpad.net/ubuntu/+source/accountsservice/+bug/1871538/+attachment/5349957/+files/journalctl.log

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https://bugs.launchpad.net/bugs/1871538

Title:
  dbus timeout-ed during an upgrade, taking services down including gdm

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