Happens on my system as well. Prior to upgrade I had set it to 150%, but
when I try to change it to 175% for example the apply button is greyed
out. The same for VRR, while it applied for Ubuntu Noble Nombat (that
said it created artifacts when playing steam game and switched fraction
scale back to 100% by itself)

The error is slightly different for me:

cc-display-panel[49544]: WARNING: Config not applicable:
GDBus.Error:org.freedesktop.DBus.Error.InvalidArgs: Monitor mode size
doesn't match scaled monitor layout

When turning off fractional scale it defaults to 125% for some reason:

cc-display-panel[49544]: WARNING: Config not applicable:
GDBus.Error:org.freedesktop.DBus.Error.InvalidArgs: Scale 1.25 not valid
for resolution 3840x2160

When switching to 100% I can apply the setting with fractional scale
off. When I turn fraction scale back on it spams with:

08:19:14.2066                  Gsk[64489]: WARNING: Clipping is broken,
everything is clipped, but we didn't early-exit.

08:19:14.2066                  Gsk[64489]: WARNING: Clipping is broken,
everything is clipped, but we didn't early-exit.

08:19:14.2066                  Gsk[64489]: WARNING: Clipping is broken,
everything is clipped, but we didn't early-exit.

08:19:14.2066                  Gsk[64489]: WARNING: Clipping is broken,
everything is clipped, but we didn't early-exit.

Fractional Scale: 150%
Apple Inc. MacPro7,1
AMD Radeon™ RX 6800 XT
Linux 6.11.0-1-t2-noble
Wayland
gnome-control-center 47.0.1-1ubuntu1

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https://bugs.launchpad.net/bugs/2080374

Title:
  Unable to change refresh rate and scaling for display

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