As comment in https://github.com/home-sweet-gnome/dash-to-
panel/issues/1500#issuecomment-962511964, this problem is caused by
dash-to-dock not release the hooks of nautilus.

This issue could be fixed by disable-enable the dash-to-panel after
editing the /usr/share/gnome-shell/extensions/ubuntu-
[email protected]/docking.js as https://github.com/micheleg/dash-to-
dock/pull/1582/files.

** Bug watch added: github.com/home-sweet-gnome/dash-to-panel/issues #1500
   https://github.com/home-sweet-gnome/dash-to-panel/issues/1500

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Packages, which is subscribed to nautilus in Ubuntu.
https://bugs.launchpad.net/bugs/1948599

Title:
  Nautilus icon missing from taskbar (21.10; Xorg)

Status in nautilus package in Ubuntu:
  Incomplete

Bug description:
  Upgraded to 21.10.  I am using Ubuntu Tweaks to set a bottom of screen 
taskbar. Nautilus (Files) was pinned to the taskbar.  I discovered that Waland 
was incompatible with my graphics card, so switched to Xorg.  I think at this 
point the Files icon disappeared (and just possibly some others I have not 
noticed).  I can launch Nautilus from the launcher, but the icon does not 
appear.
  Nautilus version 1:40.2-1ubuntu1

  Expected behaviour 1:  The pinned icon would remain visible on the taskbar.
  Observed behaviour 1:  The pinned icon disappeared from the taskbar.

  Expected behaviour 2:  When Nautilus is open the icon will be visible on the 
taskbar.
  Observed behaviour 2:  When Nautilus is open the icon is not visible on the 
taskbar.

  ProblemType: Bug
  DistroRelease: Ubuntu 21.10
  Package: nautilus 1:40.2-1ubuntu1
  ProcVersionSignature: Ubuntu 5.13.0-20.20-generic 5.13.14
  Uname: Linux 5.13.0-20-generic x86_64
  ApportVersion: 2.20.11-0ubuntu70
  Architecture: amd64
  CasperMD5CheckResult: pass
  CurrentDesktop: ubuntu:GNOME
  Date: Sun Oct 24 21:28:18 2021
  ExecutablePath: /usr/bin/nautilus
  InstallationDate: Installed on 2021-05-27 (149 days ago)
  InstallationMedia: Ubuntu 21.04 "Hirsute Hippo" - Release amd64 (20210420)
  ProcEnviron:
   SHELL=/bin/bash
   XDG_RUNTIME_DIR=<set>
   PATH=(custom, no user)
   LANGUAGE=en_GB:en
   LANG=en_GB.UTF-8
  SourcePackage: nautilus
  UpgradeStatus: Upgraded to impish on 2021-10-14 (9 days ago)
  usr_lib_nautilus:
   evince                            40.4-2
   file-roller                       3.40.0-2
   nautilus-dropbox                  2019.02.14-1ubuntu1
   nautilus-extension-gnome-terminal 3.38.1-1ubuntu2
   nautilus-share                    0.7.3-2ubuntu4

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