For me, the bug (assuming it's the same one) manifests itself as an
incorrectly placed dot on a primary workspace. After I have used the
"Show Applications" menu to move a "favorite" app to another workspace,
I click back to the primary workspace. Even though the app is not on
this primary workspace, the indicator dot remains. Toggling between the
two workspaces resolves the issue and the dot goes away while I'm
looking at the primary workspace.

I have these extensions enabled:
[email protected]
[email protected]
[email protected]

Note that this problem does not exist for apps that are on the other
side of the separator, along with the recycle bin. I have firefox,
files, and terminal pinned using "favorite". This would explain why the
initial comment mentions "files" as it's probably pinned.

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https://bugs.launchpad.net/bugs/2004554

Title:
  Dock shows wrong indicator dots (eventually) when "Include
  applications from the current workspace only" is enabled

Status in gnome-shell-extension-ubuntu-dock package in Ubuntu:
  Triaged

Bug description:
  While switching workspace, the option : include applications from
  current workspace only is opted. The files founder does not switch
  properly. If opened in one workspace, and switched to another
  workspace. Then the dot ( that shoes finder is open) does not go away.
  And many more please check.

  ProblemType: Bug
  DistroRelease: Ubuntu 22.04
  Package: xorg 1:7.7+23ubuntu2
  ProcVersionSignature: Ubuntu 5.15.0-58.64-generic 5.15.74
  Uname: Linux 5.15.0-58-generic x86_64
  ApportVersion: 2.20.11-0ubuntu82.3
  Architecture: amd64
  BootLog: Error: [Errno 13] Permission denied: '/var/log/boot.log'
  CasperMD5CheckResult: unknown
  CompizPlugins: No value set for 
`/apps/compiz-1/general/screen0/options/active_plugins'
  CompositorRunning: None
  CurrentDesktop: ubuntu:GNOME
  Date: Thu Feb  2 16:47:24 2023
  DistUpgraded: 2023-01-27 15:07:45,014 DEBUG Running PostInstallScript: 
'/usr/lib/ubuntu-advantage/upgrade_lts_contract.py'
  DistroCodename: jammy
  DistroVariant: ubuntu
  ExtraDebuggingInterest: Yes
  GraphicsCard:
   Intel Corporation CoffeeLake-H GT2 [UHD Graphics 630] [8086:3e9b] (prog-if 
00 [VGA controller])
     Subsystem: Micro-Star International Co., Ltd. [MSI] CoffeeLake-H GT2 [UHD 
Graphics 630] [1462:12aa]
   NVIDIA Corporation TU106M [GeForce RTX 2060 Mobile] [10de:1f15] (rev a1) 
(prog-if 00 [VGA controller])
     Subsystem: Micro-Star International Co., Ltd. [MSI] TU106M [GeForce RTX 
2060 Mobile] [1462:12aa]
  InstallationDate: Installed on 2021-05-11 (631 days ago)
  InstallationMedia: Ubuntu 20.04.2.0 LTS "Focal Fossa" - Release amd64 
(20210209.1)
  MachineType: Micro-Star International Co., Ltd. GF65 Thin 9SEXR
  ProcEnviron:
   LANGUAGE=en_IN:en
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_IN
   SHELL=/bin/bash
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-5.15.0-58-generic 
root=UUID=f2aafeb8-65f1-4f53-a7f4-a8bac75a5fbd ro quiet splash vt.handoff=7
  SourcePackage: xorg
  Symptom: display
  UpgradeStatus: Upgraded to jammy on 2023-01-27 (6 days ago)
  dmi.bios.date: 10/21/2021
  dmi.bios.release: 1.12
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: E16W1IMS.10C
  dmi.board.asset.tag: Default string
  dmi.board.name: MS-16W1
  dmi.board.vendor: Micro-Star International Co., Ltd.
  dmi.board.version: REV:1.0
  dmi.chassis.asset.tag: Default string
  dmi.chassis.type: 10
  dmi.chassis.vendor: Micro-Star International Co., Ltd.
  dmi.chassis.version: Default string
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrE16W1IMS.10C:bd10/21/2021:br1.12:svnMicro-StarInternationalCo.,Ltd.:pnGF65Thin9SEXR:pvrREV1.0:rvnMicro-StarInternationalCo.,Ltd.:rnMS-16W1:rvrREV1.0:cvnMicro-StarInternationalCo.,Ltd.:ct10:cvrDefaultstring:sku16W1.1:
  dmi.product.family: GF
  dmi.product.name: GF65 Thin 9SEXR
  dmi.product.sku: 16W1.1
  dmi.product.version: REV:1.0
  dmi.sys.vendor: Micro-Star International Co., Ltd.
  version.compiz: compiz N/A
  version.libdrm2: libdrm2 2.4.110-1ubuntu1
  version.libgl1-mesa-dri: libgl1-mesa-dri 22.0.5-0ubuntu0.3
  version.libgl1-mesa-glx: libgl1-mesa-glx N/A
  version.xserver-xorg-core: xserver-xorg-core 2:21.1.3-2ubuntu2.5
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev N/A
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 1:19.1.0-2ubuntu1
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 
2:2.99.917+git20210115-1
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:1.0.17-2build1

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