Thank you to those who filed the bug report and those who worked on a
solution. My NVIDIA driver was stable until I made a change in the xorg
file (to use two screens). Then the random logouts began with certain
applications only (Skype and VirtualBox most notably). The solution
proposed here seem to have fixed the issue. I am running 12.04 LTS
64-bit, ASUS laptop with NVIDIA video card, cinnamon desktop.

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https://bugs.launchpad.net/bugs/980519

Title:
  Random log off in Ubuntu 12.04 LTS

Status in Unity:
  Fix Released
Status in “nvidia-graphics-drivers” package in Ubuntu:
  Fix Released
Status in “xorg” package in Ubuntu:
  Fix Released
Status in Fedora:
  New

Bug description:
  I get logged off from Ubuntu sometimes. There is no error message or
  any indication that it is going to log off. The screen goes black, and
  after 2-4 seconds, i get presented with the Ubuntu Log On Screen.

  There is no clear pattern (or at least if have not noticed any). One
  time i am working with Netbeans, another time i am using firefox. This
  also means that at present i can not clearly say what package might be
  causing this behaviour.

  I am fairly sure the problem lies in 12.04 (or more precise - the
  combination of 12.04 and the hardware i am using). I do not have the
  same problem running 11.04 or 11.10.

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