If you did not manually insall nvidia driver, it would be interestinf to see 
the dpkg/apt logs. This command should attach them:
apport-collect 1137701

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to xserver-xorg-video-ati in Ubuntu.
https://bugs.launchpad.net/bugs/1137701

Title:
  ATI card not recognized after latest apt-get upgrade

Status in “xserver-xorg-video-ati” package in Ubuntu:
  New

Bug description:
  This happened after my latest daily apt-get update && apt-get upgrade on 
Kubuntu. No other changes, no reconfiguration, done.
  All desktop effects are gone.
  No GLX supported any longer.

  $ dpkg -l | grep radeo
  ii  libdrm-radeon1:i386                  2.4.39-0ubuntu1                      
     i386         Userspace interface to radeon-specific kernel DRM services -- 
runtime
  ii  radeontool                           1.6.2-1.1build1                      
     i386         utility to control ATI Radeon backlight functions on laptops
  ii  xserver-xorg-video-radeon            
1:6.99.99~git20120913.8637f772-0ubuntu1   i386         X.Org X server -- 
AMD/ATI Radeon display driver

  $ lspci -vk
  01:00.0 VGA compatible controller: Advanced Micro Devices [AMD] nee ATI Cedar 
PRO [Radeon HD 5450/6350] (prog-if 00 [VGA controller])
          Subsystem: Dell Device 2126
          Flags: bus master, fast devsel, latency 0, IRQ 48
          Memory at d0000000 (64-bit, prefetchable) [size=256M]
          Memory at e1420000 (64-bit, non-prefetchable) [size=128K]
          I/O ports at 3000 [size=256]
          Expansion ROM at e1400000 [disabled] [size=128K]
          Capabilities: <access denied>
          Kernel driver in use: radeon
          Kernel modules: radeon

  XFree86
  [    25.853] (II) LoadModule: "fglrx"
  [    25.919] (WW) Warning, couldn't open module fglrx
  [    25.919] (II) UnloadModule: "fglrx"
  [    25.919] (II) Unloading fglrx
  [    25.919] (EE) Failed to load module "fglrx" (module does not exist, 0)
  [    25.919] (II) LoadModule: "ati"
  [    25.919] (II) Loading /usr/lib/xorg/modules/drivers/ati_drv.so
  [    25.919] (II) Module ati: vendor="X.Org Foundation"
  [    25.919]    compiled for 1.13.0, module version = 6.99.99
  [    25.919]    Module class: X.Org Video Driver
  [    25.919]    ABI class: X.Org Video Driver, version 13.0
  [    25.919] (II) LoadModule: "radeon"
  [    25.919] (II) Loading /usr/lib/xorg/modules/drivers/radeon_drv.so
  [    25.919] (II) Module radeon: vendor="X.Org Foundation"
  [    25.919]    compiled for 1.13.0, module version = 6.99.99
  [    25.919]    Module class: X.Org Video Driver
  [    25.919]    ABI class: X.Org Video Driver, version 13.0
  [    25.919] (II) LoadModule: "vesa"
  [    25.919] (II) Loading /usr/lib/xorg/modules/drivers/vesa_drv.so
  [    25.919] (II) Module vesa: vendor="X.Org Foundation"
  [    25.919]    compiled for 1.12.99.902, module version = 2.3.2
  [    25.919]    Module class: X.Org Video Driver
  [    25.919]    ABI class: X.Org Video Driver, version 13.0
  [    25.919] (II) LoadModule: "modesetting"
  [    25.919] (II) Loading /usr/lib/xorg/modules/drivers/modesetting_drv.so
  [    25.920] (II) Module modesetting: vendor="X.Org Foundation"
  [    25.920]    compiled for 1.13.0, module version = 0.5.0
  [    25.920]    Module class: X.Org Video Driver
  [    25.920]    ABI class: X.Org Video Driver, version 13.0
  [    25.920] (II) LoadModule: "fbdev"
  [    25.920] (II) Loading /usr/lib/xorg/modules/drivers/fbdev_drv.so
  [    25.920] (II) Module fbdev: vendor="X.Org Foundation"
  [    25.920]    compiled for 1.12.99.902, module version = 0.4.3
  [    25.920]    Module class: X.Org Video Driver
  [    25.920]    ABI class: X.Org Video Driver, version 13.0
  [    25.920] (==) Matched fglrx as autoconfigured driver 0
  [    25.920] (==) Matched ati as autoconfigured driver 1
  [    25.920] (==) Matched fglrx as autoconfigured driver 2
  [    25.920] (==) Matched ati as autoconfigured driver 3
  [    25.920] (==) Matched vesa as autoconfigured driver 4
  [    25.920] (==) Matched modesetting as autoconfigured driver 5
  [    25.920] (==) Matched fbdev as autoconfigured driver 6
  [    25.920] (==) Assigned the driver to the xf86ConfigLayout
  [    25.920] (II) LoadModule: "fglrx"
  [    25.920] (WW) Warning, couldn't open module fglrx
  [    25.920] (II) UnloadModule: "fglrx"
  [    25.920] (II) Unloading fglrx
  [    25.920] (EE) Failed to load module "fglrx" (module does not exist, 0)
  [    25.920] (II) LoadModule: "ati"
  [    25.920] (II) Loading /usr/lib/xorg/modules/drivers/ati_drv.so
  [    25.920] (II) Module ati: vendor="X.Org Foundation"
  [    25.920]    compiled for 1.13.0, module version = 6.99.99
  [    25.920]    Module class: X.Org Video Driver
  [    25.920]    ABI class: X.Org Video Driver, version 13.0
  ....
  [    26.037] (--) Depth 24 pixmap format is 32 bpp
  [    26.037] (II) RADEON(0): [DRI2] Setup complete
  [    26.037] (II) RADEON(0): [DRI2]   DRI driver: r600
  [    26.037] (II) RADEON(0): [DRI2]   VDPAU driver: r600
  [    26.037] (II) RADEON(0): Front buffer size: 9000K
  [    26.037] (II) RADEON(0): VRAM usage limit set to 219499K
  [    26.037] (==) RADEON(0): Backing store disabled
  [    26.037] (II) RADEON(0): Direct rendering enabled
  [    26.037] (II) RADEON(0): Setting EXA maxPitchBytes
  [    26.037] (II) EXA(0): Driver allocated offscreen pixmaps
  [    26.037] (II) EXA(0): Driver registered support for the following 
operations:
  [    26.037] (II)         Solid
  [    26.037] (II)         Copy
  [    26.037] (II)         Composite (RENDER acceleration)
  [    26.037] (II)         UploadToScreen
  [    26.037] (II)         DownloadFromScreen
  [    26.037] (II) RADEON(0): Acceleration enabled
  [    26.037] (==) RADEON(0): DPMS enabled
  [    26.037] (==) RADEON(0): Silken mouse enabled
  [    26.037] (II) RADEON(0): Set up textured video
  [    26.037] (II) RADEON(0): [XvMC] Associated with Radeon Textured Video.
  [    26.037] (II) RADEON(0): [XvMC] Extension initialized.
  [    26.037] (II) RADEON(0): RandR 1.2 enabled, ignore the following RandR 
disabled message.
  [    26.037] (--) RandR disabled
  [    26.042] (EE) Failed to initialize GLX extension (Compatible NVIDIA X 
driver not found)
  [    26.260] (II) RADEON(0): Setting screen physical size to 507 x 317

  This looks all wrong to me.

  I am not the only one, though, as it seems:
  http://www.ebugg-i.com/forums/linux/system-updates-killed-effects.html
  http://ubuntuforums.org/showthread.php?t=2120847

  Any idea what went wrong and how to rectify this is welcome,

  Uwe

  ProblemType: Bug
  DistroRelease: Ubuntu 12.10
  Package: xserver-xorg-video-ati 1:6.99.99~git20120913.8637f772-0ubuntu1
  ProcVersionSignature: Ubuntu 3.5.0-25.39-generic 3.5.7.4
  Uname: Linux 3.5.0-25-generic i686
  ApportVersion: 2.6.1-0ubuntu10
  Architecture: i386
  Date: Fri Mar  1 13:22:15 2013
  InstallationDate: Installed on 2012-04-03 (332 days ago)
  InstallationMedia: Kubuntu 11.10 "Oneiric Ocelot" - Release i386 (20111012)
  MarkForUpload: True
  ProcEnviron:
   LANGUAGE=
   TERM=xterm
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: xserver-xorg-video-ati
  UpgradeStatus: Upgraded to quantal on 2012-10-22 (129 days ago)

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