I've attached the manuals for the two displays. The relevant pages seem
to be:

Samsung Manual: p44 (labeled 42), discusses HDMI in CEA mode for 1080p
Acer Manual: p12, standard timing table

My best guess for what is happening is that Ubuntu's display output
timing over HDMI is slightly out of sync with what the Acer monitor
expects, and hence some kind of "re-sync" process is happening about
once a second. Or the timing of the laptop's built-in display is
slightly different than that of the external monitor, causing the noveau
driver to freak out about once a second as it tries to reconcile this.

In my Xorg log file, I see a lot of stuff like this:

[  1878.231] (II) intel(0): EDID vendor "LGD", prod id 489
[  1878.231] (II) intel(0): Printing DDC gathered Modelines:
[  1878.231] (II) intel(0): Modeline "1920x1080"x0.0  138.50  1920 1968 2000 
2080  1080 1083 1088 1111 -hsync -vsync (66.6 kHz eP)
[  1879.796] (II) intel(0): Allocated new frame buffer 3840x1080 stride 15360, 
tiled
[  2099.091] (II) intel(0): EDID vendor "LGD", prod id 489
[  2099.091] (II) intel(0): Printing DDC gathered Modelines:
[  2099.091] (II) intel(0): Modeline "1920x1080"x0.0  138.50  1920 1968 2000 
2080  1080 1083 1088 1111 -hsync -vsync (66.6 kHz eP)
[  2111.153] (II) intel(0): EDID vendor "LGD", prod id 489
[  2111.153] (II) intel(0): Printing DDC gathered Modelines:
[  2111.154] (II) intel(0): Modeline "1920x1080"x0.0  138.50  1920 1968 2000 
2080  1080 1083 1088 1111 -hsync -vsync (66.6 kHz eP)
[  2124.123] (II) intel(0): EDID vendor "LGD", prod id 489
[  2124.123] (II) intel(0): Printing DDC gathered Modelines:

But if I look at the monitor's own menu, I see that the reported refresh
rates are H:68KHz, V:60Hz The differences here seem like a likely
culprit to me.

** Attachment added: "display_manuals.zip"
   
https://bugs.launchpad.net/ubuntu/+source/xserver-xorg-video-intel/+bug/964231/+attachment/3564050/+files/display_manuals.zip

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to xserver-xorg-video-intel in Ubuntu.
https://bugs.launchpad.net/bugs/964231

Title:
  System Stutter When HDMI Monitor Is Connected

Status in “xserver-xorg-video-intel” package in Ubuntu:
  Confirmed

Bug description:
  With a fresh install of Ubuntu 11.10 x64, the system has many
  "microfreezes" when I connect an external monitor via HDMI. These last
  maybe 10ms and occur about once per second. As I move my cursor around
  the screen, it stops motion during these microfreezes, causing a very
  irritating stutter effect. This only happens when using HDMI- when
  connected via VGA to an external monitor, the system behaves smoothly
  as expected.

  I started a thread about this a long time ago, but I never did find an
  answer: http://ubuntuforums.org/showthread.php?t=1817910

  ProblemType: Bug
  DistroRelease: Ubuntu 11.10
  Package: xorg 1:7.6+7ubuntu7.1
  Uname: Linux 3.3.0-030300rc7-generic x86_64
  .tmp.unity.support.test.0:
   
  ApportVersion: 1.23-0ubuntu4
  Architecture: amd64
  CompizPlugins: 
[core,bailer,detection,composite,opengl,compiztoolbox,decor,grid,move,vpswitch,place,mousepoll,resize,wall,regex,session,snap,gnomecompat,imgpng,animation,expo,workarounds,unitymtgrabhandles,ezoom,fade,scale,unityshell]
  CompositorRunning: compiz
  Date: Sat Mar 24 18:30:09 2012
  DistUpgraded: Fresh install
  DistroCodename: oneiric
  DistroVariant: ubuntu
  ExtraDebuggingInterest: Yes, if not too technical
  GraphicsCard:
   Intel Corporation 2nd Generation Core Processor Family Integrated Graphics 
Controller [8086:0116] (rev 09) (prog-if 00 [VGA controller])
     Subsystem: Device [1b0a:2080]
  InstallationMedia: Ubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
  MachineType: PEGATRON CORPORATION A15
  ProcEnviron:
   PATH=(cususername, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.3.0-030300rc7-generic 
root=UUID=a19e39dd-b510-4f9d-93f5-de6d40df10f1 ro quiet splash vt.handoff=7
  SourcePackage: xorg
  Symptom: display
  Title: Xorg freeze
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 06/17/2011
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: 211
  dmi.board.asset.tag: ATN12345678901234567
  dmi.board.name: A15
  dmi.board.vendor: PEGATRON CORPORATION
  dmi.board.version: 1.0
  dmi.chassis.asset.tag: No Asset Tag
  dmi.chassis.type: 9
  dmi.chassis.vendor: PEGATRON Computer Inc.
  dmi.chassis.version: 1.0
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvr211:bd06/17/2011:svnPEGATRONCORPORATION:pnA15:pvr1.0:rvnPEGATRONCORPORATION:rnA15:rvr1.0:cvnPEGATRONComputerInc.:ct9:cvr1.0:
  dmi.product.name: A15
  dmi.product.version: 1.0
  dmi.sys.vendor: PEGATRON CORPORATION
  version.compiz: compiz 1:0.9.6+bzr20110929-0ubuntu6.1
  version.ia32-libs: ia32-libs N/A
  version.libdrm2: libdrm2 2.4.26-1ubuntu1
  version.libgl1-mesa-dri: libgl1-mesa-dri 7.11-0ubuntu3
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 7.11-0ubuntu3
  version.xserver-xorg: xserver-xorg 1:7.6+7ubuntu7.1
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.6.0-1ubuntu13
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 
1:6.14.99~git20110811.g93fc084-0ubuntu1
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 
2:2.15.901-1ubuntu2.1
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:0.0.16+git20110411+8378443-1

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