Sebastien, I think this may be related to the patch applied to fix Bug
#1085320: the Gnome folks have since reverted (at least parts of) it
(see Gnome bug 688808 [1]) because it caused custom icons to be shown as
thumbnails, hence the borders reported in this LP bug. I tested this by
applying the changes in [2] to current Nautilus in Raring
(1:3.6.3-0ubuntu16), and the borders around my customized icons went
away. Also, though I didn't test very extensively, this didn't result in
desktop files again having borders as originally reported in #1085320.

(The commit log entry of [2] refers to [3], but I think it should refer
to [4] instead.)

*[1] 
https://bugzilla.gnome.org/show_bug.cgi?id=688808#short_desc_nonedit_display 
*[2] 
https://git.gnome.org/browse/nautilus/commit/?h=gnome-3-6&id=f69e472263b0bf6e1cc60c0eeaf7874fc7931f8d
*[3] 
https://git.gnome.org/browse/nautilus/commit/?id=d9ef715ea11e92917414d5d7bddd4dd1487fac1b
*[4] 
https://git.gnome.org/browse/nautilus/commit/?h=gnome-3-6&id=6cde4c5a6d639c85df09b8992a307f91d6b056a6

** Bug watch added: GNOME Bug Tracker #688808
   https://bugzilla.gnome.org/show_bug.cgi?id=688808

** Also affects: nautilus via
   https://bugzilla.gnome.org/show_bug.cgi?id=688808
   Importance: Unknown
       Status: Unknown

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You received this bug notification because you are a member of Desktop
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https://bugs.launchpad.net/bugs/1170976

Title:
  Desktop icons changed by user, display white border around them

Status in Nautilus:
  Unknown
Status in “nautilus” package in Ubuntu:
  Confirmed

Bug description:
  Right click on a desktop icon and select properties. Select a new icon
  via user/share/icons. The new icon then displays a white border. This
  is happening with my mounted usb thumb drives and a usb hard drive.

  ProblemType: Bug
  DistroRelease: Ubuntu 13.04
  Package: nautilus 1:3.6.3-0ubuntu16
  ProcVersionSignature: Ubuntu 3.8.0-19.29-generic 3.8.8
  Uname: Linux 3.8.0-19-generic x86_64
  NonfreeKernelModules: nvidia
  ApportVersion: 2.9.2-0ubuntu8
  Architecture: amd64
  Date: Sat Apr 20 17:53:01 2013
  ExecutablePath: /usr/bin/nautilus
  GsettingsChanges: b'org.gnome.nautilus.window-state' b'geometry' 
b"'1011x738+159+129'"
  InstallationDate: Installed on 2013-04-13 (7 days ago)
  InstallationMedia: Ubuntu 13.04 "Raring Ringtail" - Alpha amd64 (20130413)
  MarkForUpload: True
  ProcEnviron:
   LANGUAGE=en_GB:en
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_GB.UTF-8
   SHELL=/bin/bash
  SourcePackage: nautilus
  UpgradeStatus: No upgrade log present (probably fresh install)

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