I'm able to reproduce this...

1. Make sure Empathy is not running. If it is running quit it, or kill it from 
the system monitor.
2. In a terminal, start empathy using the "start hidden option, as follows:
    $ empathy -h
3. Notice that empathy is now running in system moitor.
4. From the messaging menu indicator applet, select Empathy.
5. The Empathy Contact List window does *not* appear, as expected.
6. Now try to start Empathy from the Unity Dash.
7. Again, the Empathy Contact List window does not appear, as expected.
8. Notice that empathy is still running in the background in system moitor.

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to empathy in Ubuntu.
https://bugs.launchpad.net/bugs/1179180

Title:
  Impossible to open Empathy contact list window if already started with
  '-h' option

Status in “empathy” package in Ubuntu:
  Confirmed

Bug description:
  If I add Empathy to 'Startup Applications' to start it with '-h'
  option, I'll never be able to open the contact list window.

  Tried:
  - If query with 'ps -ef | grep emapthy', I can see empathy is running.
  - If run 'empathy' from command line, the command exits without any output, 
but nothing happens after that.
  - If choose 'Empathy Internet Messaging' from Unity Dashboard, nothing 
happens.
  - If choose from the locked lens, I can see the icon "blinks slowly" (if you 
know what I mean, I'm not native speaker of English), and then it stops 
blinking, nothing happens after that.

  However, if I didn't start Empathy with '-h' option, everything seems
  normal.

  ProblemType: Bug
  DistroRelease: Ubuntu 13.04
  Package: empathy 3.6.4-0ubuntu4
  ProcVersionSignature: Ubuntu 3.8.0-19.30-generic 3.8.8
  Uname: Linux 3.8.0-19-generic x86_64
  NonfreeKernelModules: nvidia
  ApportVersion: 2.9.2-0ubuntu8
  Architecture: amd64
  Date: Sun May 12 18:27:52 2013
  InstallationDate: Installed on 2012-08-12 (273 days ago)
  InstallationMedia: Ubuntu 12.04 LTS "Precise Pangolin" - Release amd64 
(20120425)
  MarkForUpload: True
  ProcEnviron:
   TERM=xterm
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: empathy
  UpgradeStatus: Upgraded to raring on 2013-04-26 (16 days ago)

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