I just retest the issue. It seems to be a thunderbird@ubuntu problem.

* I can still reproduce it in thunderbird 24 below ubuntu 13.04.
* I have also "backported" icedove from debian/jessie. Here the problem is not 
reproducible and the lockPref statement is working correct.

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https://bugs.launchpad.net/bugs/1081015

Title:
  lockPref() in /etc/thunderbird/syspref.js is not working

Status in Mozilla Thunderbird Mail and News:
  Invalid
Status in “thunderbird” package in Ubuntu:
  Invalid

Bug description:
  Via /etc/thunderbird/sysprefs.js is it possible to set system wide 
configuration settings.
  lockPref() should ensure that the user can't change this setting.

  The same mechanism is implemented for firefox (and working).

  For thunderbird this is broken. The whole content of sysprefs.js is
  ignored.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: thunderbird 16.0.2+build1-0ubuntu0.12.04.1
  ProcVersionSignature: Ubuntu 3.5.0-18.29~precise1-generic 3.5.7
  Uname: Linux 3.5.0-18-generic x86_64
  AddonCompatCheckDisabled: False
  AlsaVersion: Advanced Linux Sound Architecture Driver Version 1.0.25.
  ApportVersion: 2.0.1-0ubuntu15
  Architecture: amd64
  ArecordDevices:
   **** Liste der Hardware-Geräte (CAPTURE) ****
   Karte 0: PCH [HDA Intel PCH], Gerät 0: STAC92xx Analog [STAC92xx Analog]
     Sub-Geräte: 2/2
     Sub-Gerät #0: subdevice #0
     Sub-Gerät #1: subdevice #1
  AudioDevicesInUse:
   BEN.        PID ZUGR.  BEFEHL
   /dev/snd/controlC0:  dschmi     7231 F.... pulseaudio
  BuildID: 20121028144826
  CRDA: Error: [Errno 2] Datei oder Verzeichnis nicht gefunden
  Card0.Amixer.info:
   Card hw:0 'PCH'/'HDA Intel PCH at 0xd4720000 irq 51'
     Mixer name : 'Intel CougarPoint HDMI'
     Components : 'HDA:111d7605,103c162a,00100105 
HDA:80862805,80860101,00100000'
     Controls      : 32
     Simple ctrls  : 15
  Channel: Unavailable
  Date: Tue Nov 20 09:19:41 2012
  Extensions: extensions.sqlite corrupt or missing
  ForcedLayersAccel: False
  IncompatibleExtensions: Unavailable (corrupt or non-existant 
compatibility.ini or extensions.sqlite)
  IwConfig: Error: [Errno 2] Datei oder Verzeichnis nicht gefunden
  Locales: extensions.sqlite corrupt or missing
  MarkForUpload: True
  PrefErrors: Unexpected character 'g' before pref name @ user.js:2
  Profiles: Profile0 (Default) - LastVersion=16.0.2/20121028144826 (In use)
  RfKill: Error: [Errno 2] Datei oder Verzeichnis nicht gefunden
  RunningIncompatibleAddons: False
  SourcePackage: thunderbird
  Themes: extensions.sqlite corrupt or missing
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 10/24/2011
  dmi.bios.vendor: Hewlett-Packard
  dmi.bios.version: 68SOU Ver. F.20
  dmi.board.name: 162A
  dmi.board.vendor: Hewlett-Packard
  dmi.board.version: KBC Version 05.35
  dmi.chassis.type: 10
  dmi.chassis.vendor: Hewlett-Packard
  dmi.modalias: 
dmi:bvnHewlett-Packard:bvr68SOUVer.F.20:bd10/24/2011:svnHewlett-Packard:pnHPEliteBook2760p:pvrA0005F02:rvnHewlett-Packard:rn162A:rvrKBCVersion05.35:cvnHewlett-Packard:ct10:cvr:
  dmi.product.name: HP EliteBook 2760p
  dmi.product.version: A0005F02
  dmi.sys.vendor: Hewlett-Packard
  mtime.conffile..etc.thunderbird.syspref.js: 2012-10-16T21:34:22.126938

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