I tried to reproduce this problem in Debian stable, and I cannot reproduce it all.
If I manually gunzip the file and open it with jmol, it displays fine. If I extract it with file-roller and open it in jmol, it displays fine as well. Are you sure this is not a file-roller issue? Or maybe it is a Ubuntu- specific issue. -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to file-roller in Ubuntu. https://bugs.launchpad.net/bugs/1159492 Title: science PDB file is not processed correctly after extraction Status in “file-roller” package in Ubuntu: New Status in “jmol” package in Ubuntu: New Status in “rasmol” package in Ubuntu: New Bug description: The affected archiv will be attached. When I open the archiv pdb163d.ent.gz with file roller, I get the compressed file shown in file-roller GUI, When I open it within the file-roller GUI with rasmol or jmol all works correct and the protein structure is shown. So, far so good. When I extract the compressed file to the filesystem, close file-roller, because it is no longer needed. When I ttry then to open the file pdb163d.ent with rasmol or jmol it is not possible. The file is not anymore a appopriate format for those programs. Steps to reproduce: 1.Install rasmol and jmol (oneof them may be enough) 2.Donwlaod the file pdb163d.ent.gz from here, 3.Extract the file to the filesytem with file-roller 4.Try to open the file with right mouse click - > open with... -> choose rasmol or jmol as your choice 5.See only a black visualisation or in jmol an error message(file not found exception) ProblemType: Bug DistroRelease: Ubuntu 12.10 Package: file-roller 3.6.1.1-0ubuntu1.1 ProcVersionSignature: Ubuntu 3.5.0-27.45-generic 3.5.7.7 Uname: Linux 3.5.0-27-generic x86_64 NonfreeKernelModules: fglrx ApportVersion: 2.6.1-0ubuntu10 Architecture: amd64 Date: Sun Mar 24 19:33:18 2013 ExecutablePath: /usr/bin/file-roller InstallationDate: Installed on 2013-01-13 (70 days ago) InstallationMedia: Ubuntu 12.10 "Quantal Quetzal" - Release amd64 (20121017.5) MarkForUpload: True ProcEnviron: PATH=(custom, no username) XDG_RUNTIME_DIR=<set> LANG=de_DE.UTF-8 SHELL=/bin/bash SourcePackage: file-roller UpgradeStatus: No upgrade log present (probably fresh install) To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/file-roller/+bug/1159492/+subscriptions -- Mailing list: https://launchpad.net/~desktop-packages Post to : desktop-packages@lists.launchpad.net Unsubscribe : https://launchpad.net/~desktop-packages More help : https://help.launchpad.net/ListHelp
