The issue was caused by an .Xmodmap carried over from a backup of my
dotfiles. No bug. :/

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https://bugs.launchpad.net/bugs/1323050

Title:
  Natural scrolling reverts without unchecking box

Status in Unity Settings Daemon:
  New
Status in “unity” package in Ubuntu:
  Invalid
Status in “unity-settings-daemon” package in Ubuntu:
  New

Bug description:
  I have installed Ubuntu 14.04 on my Thinkpad W510.

  The first thing I do, post-install, is enable natural scrolling.

  It works for a while, but eventually (possibly after a reboot), my
  machine reverts to "classic" scrolling direction, even though I still
  have the natural scrolling button checked in mouse preferences.

  If I *uncheck* the natural scrolling box, it then goes back to natural
  scrolling.

  I've re-installed Ubuntu 14.04 and fully updated before checking the
  natural scrolling box again, and gotten the same behavior.

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