The issue is now resolved after upgrading to Ubuntu 15.04

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https://bugs.launchpad.net/bugs/1422165

Title:
  xrandr query resets refresh rate to default setting

Status in xorg package in Ubuntu:
  New

Bug description:
  Hi,
     I faced this problem after upgrading from 14.04 to 14.10. Basically, when 
I switch display refresh rate using xrandr to some non-default value and then 
just run xrandr without any arguments, the rate resets to default. I can 
clearly see it as my TV is able to show current refresh rate. Also TV blinks 
after second xrandr invocation. So steps to reproduce are:

  1.  xrandr --output HDMI1 --mode 1920x1080 --rate 24     <-- TV switches to 
24HZ and stays in this mode.
  2.  xrandr (or xrandr --nograb)  <-- TV blinks and switches back to default 
60HZ.

    The original problem was observed in Kodi (ex Xbmc) - it failed to
  enable (and still fails) 24HZ video refresh rate, I analyzed Kodi
  sources and found out that above mentioned steps are indeed used by
  Kodi to switch refresh rate. Note that fore some reason the switch to
  50HZ refresh rate does NOT exibit the problem, but only to 24/25/30HZ
  (on my system).

  Short summary about my system:
  - 64Bit Ubuntu 14.10 (everything stock, Unity, all up-to-date)
  - TV Phillips 47PFL7108
  - CPU Intel(R) Core(TM) i7-4765T
  - Video card (builtin) Intel® HD Graphics 4600

  ProblemType: Bug
  DistroRelease: Ubuntu 14.10
  Package: xorg 1:7.7+7ubuntu2
  ProcVersionSignature: Ubuntu 3.16.0-30.40-generic 3.16.7-ckt3
  Uname: Linux 3.16.0-30-generic x86_64
  .tmp.unity.support.test.0:
   
  ApportVersion: 2.14.7-0ubuntu8.1
  Architecture: amd64
  CompizPlugins: No value set for 
`/apps/compiz-1/general/screen0/options/active_plugins'
  CompositorRunning: compiz
  CompositorUnredirectDriverBlacklist: '(nouveau|Intel).*Mesa 8.0'
  CompositorUnredirectFSW: true
  CurrentDesktop: Unity
  CurrentDmesg: Error: command ['sh', '-c', 'dmesg | comm -13 --nocheck-order 
/var/log/dmesg -'] failed with exit code 1: comm: /var/log/dmesg: Permission 
denied
  Date: Sun Feb 15 21:14:35 2015
  DistUpgraded: 2014-11-29 15:58:09,685 DEBUG enabling apt cron job
  DistroCodename: utopic
  DistroVariant: ubuntu
  ExtraDebuggingInterest: Yes
  GraphicsCard:
   Intel Corporation Xeon E3-1200 v3/4th Gen Core Processor Integrated Graphics 
Controller [8086:0412] (rev 06) (prog-if 00 [VGA controller])
     Subsystem: Gigabyte Technology Co., Ltd Device [1458:d000]
  InstallationDate: Installed on 2014-01-06 (405 days ago)
  InstallationMedia: Ubuntu 13.10 "Saucy Salamander" - Release amd64 
(20131016.1)
  MachineType: GIGABYTE MSH81TN-00
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-3.16.0-30-generic 
root=UUID=606d0fae-4275-4eb2-ad9b-f730da28cbc5 ro quiet splash vt.handoff=7
  SourcePackage: xorg
  Symptom: display
  UpgradeStatus: Upgraded to utopic on 2014-11-29 (78 days ago)
  dmi.bios.date: 10/15/2013
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: F2
  dmi.board.asset.tag: To be filled by O.E.M.
  dmi.board.name: MSH81TN-00
  dmi.board.vendor: GIGABYTE
  dmi.board.version: 1.x
  dmi.chassis.asset.tag: To Be Filled By O.E.M.
  dmi.chassis.type: 3
  dmi.chassis.vendor: To Be Filled By O.E.M.
  dmi.chassis.version: To Be Filled By O.E.M.
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrF2:bd10/15/2013:svnGIGABYTE:pnMSH81TN-00:pvr1.x:rvnGIGABYTE:rnMSH81TN-00:rvr1.x:cvnToBeFilledByO.E.M.:ct3:cvrToBeFilledByO.E.M.:
  dmi.product.name: MSH81TN-00
  dmi.product.version: 1.x
  dmi.sys.vendor: GIGABYTE
  version.compiz: compiz 1:0.9.12+14.10.20140918-0ubuntu1
  version.ia32-libs: ia32-libs N/A
  version.libdrm2: libdrm2 2.4.56-1
  version.libgl1-mesa-dri: libgl1-mesa-dri 10.3.2-0ubuntu0.1
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 10.3.2-0ubuntu0.1
  version.xserver-xorg-core: xserver-xorg-core 2:1.16.0-1ubuntu1.2
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.9.0-1ubuntu2
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 1:7.4.0-2ubuntu2
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 
2:2.99.914-1~exp1ubuntu4.2
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:1.0.11-1ubuntu2
  xserver.bootTime: Sun Feb 15 20:21:04 2015
  xserver.configfile: default
  xserver.devices:
   input        Power Button         KEYBOARD, id 6
   input        Video Bus            KEYBOARD, id 7
   input        Power Button         KEYBOARD, id 8
   input        Andrey’s Trackpad    TOUCHPAD, id 9
   input        Apple Wireless Keyboard KEYBOARD, id 10
  xserver.errors:
   
  xserver.logfile: /var/log/Xorg.0.log
  xserver.outputs:
   product id                                   0 
   vendor                                     PHL
  xserver.version: 2:1.16.0-1ubuntu1.2

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