This is actually a Unity issue in how it handles the unmapped Software
Updater window.  I'm able to reproduce the issue using the instructions
in https://bugs.launchpad.net/compiz/+bug/1003950/comments/87.

I think I have a fix and will propose the solution very soon.

** Package changed: compiz (Ubuntu) => unity (Ubuntu)

** No longer affects: update-manager (Ubuntu)

** No longer affects: update-manager (Ubuntu Precise)

** Also affects: unity
   Importance: Undecided
       Status: New

** Changed in: unity
       Status: New => In Progress

** Changed in: unity
   Importance: Undecided => High

** Changed in: unity
     Assignee: (unassigned) => Christopher Townsend (townsend)

** Changed in: unity
    Milestone: None => 7.3.3

** Changed in: unity (Ubuntu)
       Status: Triaged => In Progress

** Changed in: unity (Ubuntu)
     Assignee: (unassigned) => Christopher Townsend (townsend)

** Also affects: unity/7.2
   Importance: Undecided
       Status: New

** Changed in: unity/7.2
       Status: New => Triaged

** Changed in: unity/7.2
   Importance: Undecided => High

** Changed in: unity/7.2
     Assignee: (unassigned) => Christopher Townsend (townsend)

** Changed in: unity/7.2
    Milestone: None => 7.2.6

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https://bugs.launchpad.net/bugs/989588

Title:
  update-manager popup is shown on launcher and alt-tab list but window
  doesn't show up

Status in Unity:
  In Progress
Status in Unity 7.2 series:
  Triaged
Status in unity package in Ubuntu:
  In Progress
Status in unity source package in Precise:
  Triaged

Bug description:
  Yesterday I got a "popup" from update-manager that shows on the
  launcher how many updated packages there are available, but left-
  clicking the icon didn't show the window. Alt-tabbing didn't help
  either, so I closed it from the right-click menu and the next time it
  showed I did get a proper popup window.

  Today this happened again, so filing a bug now.

  Steps to reproduce, hastily written:

  0. (create another user account)
  1. login to my main account
  2. lock screen
  3. switch user
  4. update package lists
  5. switch back to main user

  Update-manager window is shown in Launcher and Alt-Tab, but does not
  appear when selected, by either means.

  Closing update-manager from the quicklist, and restarting, makes a
  visible window, as we've said.  Also, starting the upgrade from the
  quicklist worked, and the in-progress dialog appeared normally.  BUT,
  when the upgrade was done, and should return to the main window, that
  window was still inaccessible.

  I don't know if the two-session scenario is the only way this bug
  shows up, currently.  I used to have this problem, under Precise, with
  only one user session.  But I haven't seen that behaviour in a while.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: compiz 1:0.9.7.6-0ubuntu1
  ProcVersionSignature: Ubuntu 3.2.0-23.36-generic 3.2.14
  Uname: Linux 3.2.0-23-generic x86_64
  .tmp.unity.support.test.0:

  ApportVersion: 2.0.1-0ubuntu5
  Architecture: amd64
  CompizPlugins: 
[core,composite,opengl,decor,vpswitch,compiztoolbox,imgpng,snap,unitymtgrabhandles,mousepoll,place,resize,regex,wall,move,grid,gnomecompat,session,animation,fade,expo,scale,workarounds,unityshell]
  CompositorRunning: compiz
  Date: Fri Apr 27 13:22:22 2012
  DistUpgraded: 2012-01-14 13:59:33,902 DEBUG enabling apt cron job
  DistroCodename: precise
  DistroVariant: ubuntu
  GraphicsCard:
   Intel Corporation 2nd Generation Core Processor Family Integrated Graphics 
Controller [8086:0102] (rev 09) (prog-if 00 [VGA controller])
     Subsystem: Intel Corporation Device [8086:2210]
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Release amd64 (20110427.1)
  MachineType: Intel Corporation SandyBridge Platform
  PackageArchitecture: all
  ProcEnviron:
   TERM=xterm
   PATH=(custom, user)
   LANG=fi_FI.UTF-8
   SHELL=/bin/zsh
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.2.0-23-generic 
root=UUID=921d8d6a-73e4-4693-8a6a-10cbceb5b51c ro quiet splash vt.handoff=7
  SourcePackage: compiz
  UpgradeStatus: Upgraded to precise on 2012-01-14 (103 days ago)
  dmi.bios.date: 01/13/2011
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: ASNBCPT1.86C.0061.P00.1101131110
  dmi.board.asset.tag: To be filled by O.E.M.
  dmi.board.name: LosLunas CRB
  dmi.board.vendor: Intel Corporation
  dmi.board.version: To be filled by O.E.M.
  dmi.chassis.asset.tag: To Be Filled By O.E.M.
  dmi.chassis.type: 3
  dmi.chassis.vendor: To Be Filled By O.E.M.
  dmi.chassis.version: To Be Filled By O.E.M.
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrASNBCPT1.86C.0061.P00.1101131110:bd01/13/2011:svnIntelCorporation:pnSandyBridgePlatform:pvrTobefilledbyO.E.M.:rvnIntelCorporation:rnLosLunasCRB:rvrTobefilledbyO.E.M.:cvnToBeFilledByO.E.M.:ct3:cvrToBeFilledByO.E.M.:
  dmi.product.name: SandyBridge Platform
  dmi.product.version: To be filled by O.E.M.
  dmi.sys.vendor: Intel Corporation
  version.compiz: compiz 1:0.9.7.6-0ubuntu1
  version.ia32-libs: ia32-libs 20090808ubuntu35
  version.libdrm2: libdrm2 2.4.32-1ubuntu1
  version.libgl1-mesa-dri: libgl1-mesa-dri 8.0.2-0ubuntu3
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 8.0.2-0ubuntu3
  version.xserver-xorg-core: xserver-xorg-core 2:1.11.4-0ubuntu10
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.7.0-0ubuntu1
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 
1:6.14.99~git20111219.aacbd629-0ubuntu2
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 2:2.17.0-1ubuntu4
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:0.0.16+git20111201+b5534a1-1build2

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