After the last update, TexStudio settings works correctly, however nautilus is 
still do not save icons position.
Logs files are attached.

** Attachment added: "logs.zip"
   
https://bugs.launchpad.net/ubuntu/+source/nautilus/+bug/1550199/+attachment/4586453/+files/logs.zip

** Description changed:

  I'm using Ubuntu 16.04.
  
  Applications cannot change their settings. For instance when I change an
  icons position in the desktop, then I update it; the icon returns to
  default position. Also,  when I change settings of TeXstudio  and then
  re-start it I get only last settings, new settings are not applied.
  
  I've applied : sudo chown [username]:[username] -R ~/.config
  but the problem persists.
+ 
+ Release infos: 
+ No LSB modules are available.
+ Distributor ID:       Ubuntu
+ Description:  Ubuntu Xenial Xerus (development branch)
+ Release:      16.04
+ Codename:     xenial

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https://bugs.launchpad.net/bugs/1550199

Title:
  applications cannot update settings

Status in nautilus package in Ubuntu:
  Incomplete

Bug description:
  I'm using Ubuntu 16.04.

  Applications cannot change their settings. For instance when I change
  an icons position in the desktop, then I update it; the icon returns
  to default position. Also,  when I change settings of TeXstudio  and
  then re-start it I get only last settings, new settings are not
  applied.

  I've applied : sudo chown [username]:[username] -R ~/.config
  but the problem persists.

  Release infos: 
  No LSB modules are available.
  Distributor ID:       Ubuntu
  Description:  Ubuntu Xenial Xerus (development branch)
  Release:      16.04
  Codename:     xenial

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