I have now filed a report upstream on this issue:
https://bugzilla.gnome.org/show_bug.cgi?id=763769

** Bug watch added: GNOME Bug Tracker #763769
   https://bugzilla.gnome.org/show_bug.cgi?id=763769

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https://bugs.launchpad.net/bugs/1558156

Title:
  System Monitor numbers changes but not graphs when viewing it through
  the Activities Overview (this happens often but not all the time)

Status in Ubuntu GNOME:
  New
Status in gnome-shell package in Ubuntu:
  New
Status in gnome-system-monitor package in Ubuntu:
  New

Bug description:
  Although I have noticed this issue only with the System Monitor I do
  not know if it is isolated to it, but for some reason sometimes (about
  half the time) when viewing the System Monitor through the Activities
  Overview I get this strange effect where the numbers are clearly
  changing but the graphs are not:

      System_Monitor_Activities_Overview_Only_Numbers_Changing.mp4

  And when I click on the application the graphs often then show
  something very different and carry as they were, so I'm going to say
  that I don't think that this is just an accurate display of the System
  Monitor going wrong, but rather something meaning that it is not
  displayed properly.

  I can also close and reopen the Activities Overview and the System
  Monitor will only snap out of it when I actually go to it (though I
  will have to test if it only corrects the problem when I go to it
  through the Activities Overview, but I think that that is the case).

  I am running Ubuntu GNOME 15.10 with GNOME 3.18, but I am sure that
  this issue was also present under Ubuntu GNOME 15.04 with GNOME 3.16.
  I only really do fresh installs so it's not going to just be faulty
  installation thing as I do them a lot.

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