In yakkety there is no longer supposed to be a local forwarding
nameserver (instance of dnsmasq) listening at 127.0.1.1. Instead an
instande of resolved is started. Name resolution requests are fed to it
via the name service switch (configured with nsswitch.conf) rather than
via the libc resolver (configured with resolv.conf).

Announcement: https://lists.ubuntu.com/archives/ubuntu-
devel/2016-May/039350.html

Please post the output of the /usr/share/resolvconf/dump-debug-info
utility.

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https://bugs.launchpad.net/bugs/1637700

Title:
  Caching dnsmasq stops resolving after some time

Status in dnsmasq package in Ubuntu:
  New
Status in network-manager package in Ubuntu:
  New

Bug description:
  Since upgrading to yakkety my network sometimes stops working - it
  might be related to suspending the laptop. The NetworkManager-managed
  caching dnsmasq just stops resolving at some point:

   dig google.com @127.0.1.1

  ; <<>> DiG 9.10.3-P4-Ubuntu <<>> google.com @127.0.1.1
  ;; global options: +cmd
  ;; Got answer:
  ;; ->>HEADER<<- opcode: QUERY, status: REFUSED, id: 22521
  ;; flags: qr rd ra ad; QUERY: 1, ANSWER: 0, AUTHORITY: 0, ADDITIONAL: 0

  ;; QUESTION SECTION:
  ;google.com.                    IN      A

  ;; Query time: 0 msec
  ;; SERVER: 127.0.1.1#53(127.0.1.1)
  ;; WHEN: Sat Oct 29 09:12:33 CEST 2016
  ;; MSG SIZE  rcvd: 28

  
  Networking and upstream DNS are fine:

   dig google.com @8.8.8.8

  ; <<>> DiG 9.10.3-P4-Ubuntu <<>> google.com @8.8.8.8
  ;; global options: +cmd
  ;; Got answer:
  ;; ->>HEADER<<- opcode: QUERY, status: NOERROR, id: 63345
  ;; flags: qr rd ra; QUERY: 1, ANSWER: 16, AUTHORITY: 0, ADDITIONAL: 1

  ;; OPT PSEUDOSECTION:
  ; EDNS: version: 0, flags:; udp: 512
  ;; QUESTION SECTION:
  ;google.com.                    IN      A

  ;; ANSWER SECTION:
  google.com.             299     IN      A       46.134.208.30
  [...]

  ;; Query time: 43 msec
  ;; SERVER: 8.8.8.8#53(8.8.8.8)
  ;; WHEN: Sat Oct 29 09:12:31 CEST 2016
  ;; MSG SIZE  rcvd: 295

  
  Killing it resolves the issue, dnsmasq gets restarted and works again:

   ps aux | grep dnsmasq
  nobody    4262  0.0  0.0  54308  2740 ?        S    01:30   0:00 
/usr/sbin/dnsmasq --no-resolv --keep-in-foreground --no-hosts --bind-interfaces 
--pid-file=/var/run/NetworkManager/dnsmasq.pid --listen-address=127.0.1.1 
--cache-size=0 --conf-file=/dev/null --proxy-dnssec 
--enable-dbus=org.freedesktop.NetworkManager.dnsmasq 
--conf-dir=/etc/NetworkManager/dnsmasq.d
   sudo kill 4262
   dig google.com @127.0.1.1

  ; <<>> DiG 9.10.3-P4-Ubuntu <<>> google.com @127.0.1.1
  ;; global options: +cmd
  ;; Got answer:
  ;; ->>HEADER<<- opcode: QUERY, status: NOERROR, id: 58324
  ;; flags: qr rd ra; QUERY: 1, ANSWER: 16, AUTHORITY: 0, ADDITIONAL: 1

  ;; OPT PSEUDOSECTION:
  ; EDNS: version: 0, flags:; udp: 512
  ;; QUESTION SECTION:
  ;google.com.                    IN      A

  ;; ANSWER SECTION:
  google.com.             299     IN      A       46.134.208.59
  [...]

  ;; Query time: 41 msec
  ;; SERVER: 127.0.1.1#53(127.0.1.1)
  ;; WHEN: Sat Oct 29 09:12:54 CEST 2016
  ;; MSG SIZE  rcvd: 295

  ProblemType: Bug
  DistroRelease: Ubuntu 16.10
  Package: dnsmasq (not installed)
  ProcVersionSignature: Ubuntu 4.8.0-26.28-generic 4.8.0
  Uname: Linux 4.8.0-26-generic x86_64
  NonfreeKernelModules: zfs zunicode zcommon znvpair zavl
  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Sat Oct 29 09:13:04 2016
  InstallationDate: Installed on 2016-05-06 (175 days ago)
  InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 
(20160420.1)
  SourcePackage: dnsmasq
  UpgradeStatus: No upgrade log present (probably fresh install)
  --- 
  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  CurrentDesktop: Unity
  DistroRelease: Ubuntu 16.10
  IfupdownConfig:
   # interfaces(5) file used by ifup(8) and ifdown(8)
   auto lo
   iface lo inet loopback
  InstallationDate: Installed on 2016-05-06 (175 days ago)
  InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 
(20160420.1)
  NetworkManager.state:
   [main]
   NetworkingEnabled=true
   WirelessEnabled=false
   WWANEnabled=true
  NonfreeKernelModules: zfs zunicode zcommon znvpair zavl
  Package: network-manager 1.2.4-0ubuntu1
  PackageArchitecture: amd64
  ProcVersionSignature: Ubuntu 4.8.0-26.28-generic 4.8.0
  Tags: yakkety third-party-packages
  Uname: Linux 4.8.0-26-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups: adm cdrom dialout dip libvirt libvirtd lpadmin lxd plugdev 
sambashare sbuild sudo vboxusers
  _MarkForUpload: True
  
modified.conffile..etc.polkit-1.localauthority.50-local.d.org.freedesktop.NetworkManager.pkla:
 [deleted]
  nmcli-nm:
   RUNNING  VERSION  STATE      STARTUP  CONNECTIVITY  NETWORKING  WIFI-HW  
WIFI      WWAN-HW  WWAN    
   running  1.2.4    connected  started  full          enabled     enabled  
disabled  enabled  enabled

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