This issue seems to be resolved when a nautilus update happened.

** Changed in: xserver-xorg-video-intel (Ubuntu)
       Status: Confirmed => Fix Released

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https://bugs.launchpad.net/bugs/1636095

Title:
  SNA acceleration causes black background and window issues on
  secondary display

Status in xserver-xorg-video-intel package in Ubuntu:
  Fix Released

Bug description:
  After upgrading my laptop to Ubuntu 16.10, I noticed that the
  secondary monitor I use at work was showing a black background instead
  of the background shown on my primary display. Also if windows were
  dragged to the secondary display I would see weird artifacts such as
  multiple stacked copies of the window being dragged. I believe that
  this is an SNA issue on multi-monitor setups. I managed to get the old
  correct behaviour back by switching the accelaration method to UXA by
  means of Xorg configuration file.

  My workaround involves putting:

  Section "Device"
     Identifier  "Intel Graphics"
     Driver      "intel"
     Option      "AccelMethod" "uxa"
  EndSection

  inside a file named /etc/X11/xorg.conf.d/20-intel.conf

  The information needed to assemble this file was found on the Arch
  Linux Wiki.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.10
  Package: xserver-xorg-video-intel 2:2.99.917+git20160706-1ubuntu1
  ProcVersionSignature: Ubuntu 4.8.0-27.29-generic 4.8.1
  Uname: Linux 4.8.0-27-generic x86_64
  .tmp.unity_support_test.0:

  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  CompizPlugins: No value set for 
`/apps/compiz-1/general/screen0/options/active_plugins'
  CompositorRunning: compiz
  CompositorUnredirectDriverBlacklist: '(nouveau|Intel).*Mesa 8.0'
  CompositorUnredirectFSW: true
  CurrentDesktop: Unity
  Date: Mon Oct 24 08:46:43 2016
  DistUpgraded: 2016-10-23 12:03:44,922 ERROR got error from PostInstallScript 
./xorg_fix_proprietary.py (g-exec-error-quark: Failed to execute child process 
"./xorg_fix_proprietary.py" (No such file or directory) (8))
  DistroCodename: yakkety
  DistroVariant: ubuntu
  ExtraDebuggingInterest: I just need to know a workaround
  GraphicsCard:
   Intel Corporation 3rd Gen Core processor Graphics Controller [8086:0166] 
(rev 09) (prog-if 00 [VGA controller])
     Subsystem: ASUSTeK Computer Inc. 3rd Gen Core processor Graphics 
Controller [1043:124d]
  InstallationDate: Installed on 2016-08-04 (80 days ago)
  InstallationMedia: Ubuntu 16.04.1 LTS "Xenial Xerus" - Release amd64 
(20160719)
  MachineType: ASUSTeK COMPUTER INC. X550CA
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-4.8.0-27-generic.efi.signed 
root=UUID=3df9651c-956b-4a87-92ed-ac0e4f4b605d ro quiet splash vt.handoff=7
  SourcePackage: xserver-xorg-video-intel
  UpgradeStatus: Upgraded to yakkety on 2016-10-23 (0 days ago)
  dmi.bios.date: 03/24/2014
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: X550CA.300
  dmi.board.asset.tag: ATN12345678901234567
  dmi.board.name: X550CA
  dmi.board.vendor: ASUSTeK COMPUTER INC.
  dmi.board.version: 1.0
  dmi.chassis.asset.tag: No Asset Tag
  dmi.chassis.type: 10
  dmi.chassis.vendor: ASUSTeK COMPUTER INC.
  dmi.chassis.version: 1.0
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrX550CA.300:bd03/24/2014:svnASUSTeKCOMPUTERINC.:pnX550CA:pvr1.0:rvnASUSTeKCOMPUTERINC.:rnX550CA:rvr1.0:cvnASUSTeKCOMPUTERINC.:ct10:cvr1.0:
  dmi.product.name: X550CA
  dmi.product.version: 1.0
  dmi.sys.vendor: ASUSTeK COMPUTER INC.
  version.compiz: compiz 1:0.9.13.0+16.10.20160818.2-0ubuntu2
  version.ia32-libs: ia32-libs N/A
  version.libdrm2: libdrm2 2.4.70-1
  version.libgl1-mesa-dri: libgl1-mesa-dri 12.0.3-1ubuntu2
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 12.0.3-1ubuntu2
  version.xserver-xorg-core: xserver-xorg-core 2:1.18.4-1ubuntu6
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.10.2-1ubuntu1
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 1:7.7.1-1
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 
2:2.99.917+git20160706-1ubuntu1
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 1:1.0.12-2
  xserver.bootTime: Mon Oct 24 08:43:49 2016
  xserver.configfile: default
  xserver.errors:

  xserver.logfile: /var/log/Xorg.0.log
  xserver.version: 2:1.18.4-1ubuntu6
  xserver.video_driver: intel

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