I believe I'm experiencing this issue as well. If lightdm loads up, I
enter half my password and the flickering happens, I type the rest of my
password and am not able to login. I believe the flickering interrupts
my typing somehow. When I retype my password entirely after the
flickering, it works fine.

Ubuntu MATE 16.04
Ubuntu MATE desktop 1.12.1
CPU: Intel Core i7-6500U CPU @ 3.1GHz
GPU: Mesa DRI Intel(R) HD Graphics 520 (Skylake GT2)

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https://bugs.launchpad.net/bugs/1531224

Title:
  lightdm-gtk-greeter flickers once little after lightdm starts

Status in LightDM GTK+ Greeter:
  New
Status in xserver-xorg-video-intel package in Ubuntu:
  Confirmed

Bug description:
  Bug context:
   · Arch Linux x86_64 4.3.3-2-ARCH
   · systemd 228-3 (using lightdm-plymouth.service)
   · plymouth 0.9.2-8 (compiled from AUR)
   · lightdm 1:1.16.6-2
   · lightdm-gtk-greeter 1:2.0.1-2

  At the end of boot process, right after plymouth splash, lightdm starts 
normally and the GTK+ greeter login screen is shown for about 1 second, but 
then the screen instantly flickers (goes black) and the greeter is redrawn. 
From here on, everything works flawlessly, but the brief flickering is 
certainly annoying.
  This happens every time and no other greeter I have tried presents this 
issue, so I can confirm it is lightdm-gtk-greeter-related.

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