I'm having the same problem. Once I could barely se some atoms
(extremely dark gray on black). Changed the background color to light
gray, but to no avail. Here's my output:
rasmus@rasmus-Lenovo-Z710:~$ avogadro
"Avogadro version: 1.1.1 Git:
LibAvogadro version: 1.1.1 Git: "
Locale: "nb_NO"
Translation successfully loaded.
System has OpenGL support.
About to test OpenGL capabilities.
OpenGL capabilities found:
Double Buffering.
Direct Rendering.
Antialiasing.
void DBusMenuExporterPrivate::addAction(QAction*, int): Already tracking action
"" under id 62
void DBusMenuExporterPrivate::addAction(QAction*, int): Already tracking action
"" under id 63
Loading plugins: "/usr/bin/../lib/avogadro/1_1"
Searching for plugins in "/usr/lib/avogadro/1_1"
Searching for plugins in "/usr/lib/avogadro/1_1/colors"
Searching for plugins in "/usr/lib/avogadro/1_1/engines"
Searching for plugins in "/usr/lib/avogadro/1_1/extensions"
Searching for plugins in "/usr/lib/avogadro/1_1/tools"
Loading plugins: "/home/rasmus/.avogadro/1_1/plugins"
Settings are missing for the next engines: ()
QStackedLayout::setCurrentWidget: Widget 0x55bb862338e0 not contained in stack
dev warning: Extension "GAMESS" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
dev warning: Extension "Orbitals" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
dev warning: Extension "Python-terminal" is using a deprecated DockWidget
loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Vibrasjon" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
GLWidget initialisation...
GLSL support enabled, OpenGL 2.0 support confirmed.
GLWidget initialised...
createObjects()
OpenGL extension GL_ARB_texture_rectangle is present.
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: cHRM: invalid chromaticities
Chromaticities? Please help!
-r :-)
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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to avogadro in Ubuntu.
https://bugs.launchpad.net/bugs/1640171
Title:
Molecules are not rendered, black screen
Status in avogadro package in Ubuntu:
Confirmed
Bug description:
Description:
Recent version of avogadro package is not working properly. It is not
possible to draw molecule or to display molecule from the pdb/gro file.
Ubuntu version:
Description: Ubuntu 16.10
Release: 16.10
Here is the console log:
@jakubkrajniak ~ $ avogadro
"Avogadro version: 1.1.1 Git:
LibAvogadro version: 1.1.1 Git: "
Locale: "en_US"
Libavogadro translations not found.
System has OpenGL support.
About to test OpenGL capabilities.
OpenGL capabilities found:
Double Buffering.
Direct Rendering.
Antialiasing.
Loading plugins: "/usr/bin/../lib/avogadro/1_1"
Searching for plugins in "/usr/lib/avogadro/1_1"
Searching for plugins in "/usr/lib/avogadro/1_1/colors"
Searching for plugins in "/usr/lib/avogadro/1_1/engines"
Searching for plugins in "/usr/lib/avogadro/1_1/extensions"
Searching for plugins in "/usr/lib/avogadro/1_1/tools"
Loading plugins: "/home/teodor/.avogadro/1_1/plugins"
Settings are missing for the next engines: ()
QStackedLayout::setCurrentWidget: Widget 0x55f9c0f637b0 not contained in stack
dev warning: Extension "GAMESS" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
dev warning: Extension "Orbitals" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
Could not find python module...
dev warning: Extension "Python Terminal" is using a deprecated DockWidget
loading method. See Extension::dockWidgets() documentation.
dev warning: Extension "Vibration" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
GLWidget initialisation...
GLSL support enabled, OpenGL 2.0 support confirmed.
GLWidget initialised...
createObjects()
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: iCCP: known incorrect sRGB profile
libpng warning: cHRM: invalid chromaticities
Qt has caught an exception thrown from an event handler. Throwing
exceptions from an event handler is not supported in Qt. You must
reimplement QApplication::notify() and catch all exceptions there.
To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/avogadro/+bug/1640171/+subscriptions
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