No - the current behavior is the permissions property is ignored.
Currently the user is just informed that the launcher is untrusted with
no option to set as trusted. See attached

** Attachment added: "Screenshot from 2017-04-29 11-41-13.png"
   
https://bugs.launchpad.net/ubuntu/+source/nautilus/+bug/1687179/+attachment/4869582/+files/Screenshot%20from%202017-04-29%2011-41-13.png

** Changed in: nautilus (Ubuntu)
       Status: Invalid => New

** Changed in: nautilus (Ubuntu)
       Status: New => Confirmed

** Summary changed:

- Desktop icon Untrusted application launcher
+ Local application launchers can't be set as trusted

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https://bugs.launchpad.net/bugs/1687179

Title:
  Local application launchers can't be set as trusted

Status in nautilus package in Ubuntu:
  Confirmed

Bug description:
  After Nautilus update to 1:3.24.1 desktop icons are unusable. I get a message 
'Untrusted application launcher' also if in icon properties Allow executing 
file..' is selected. 
  corrado@corrado-art-uni:~$ apt-cache policy nautilus
  nautilus:
    Installed: 1:3.24.1-0ubuntu1
    Candidate: 1:3.24.1-0ubuntu1
    Version table:
   *** 1:3.24.1-0ubuntu1 500
          500 http://archive.ubuntu.com/ubuntu artful/main amd64 Packages
          100 /var/lib/dpkg/status
  corrado@corrado-art-uni:~$ 

  Same problem on Ubuntu 17.10 Unity and GNOME

  ProblemType: Bug
  DistroRelease: Ubuntu 17.10
  Package: nautilus 1:3.24.1-0ubuntu1
  ProcVersionSignature: Ubuntu 4.10.0-20.22-generic 4.10.8
  Uname: Linux 4.10.0-20-generic x86_64
  ApportVersion: 2.20.4-0ubuntu4
  Architecture: amd64
  CurrentDesktop: Unity:Unity7
  Date: Sat Apr 29 11:56:55 2017
  ExecutablePath: /usr/bin/nautilus-desktop
  GsettingsChanges:
   b'org.gnome.nautilus.window-state' b'sidebar-width' b'271'
   b'org.gnome.nautilus.window-state' b'geometry' b"'890x550+576+255'"
  InstallationDate: Installed on 2017-04-28 (1 days ago)
  InstallationMedia: Ubuntu 17.10 "Artful Aardvark" - Alpha amd64 (20170427)
  SourcePackage: nautilus
  UpgradeStatus: No upgrade log present (probably fresh install)
  usr_lib_nautilus: gnome-terminal 3.20.2-1ubuntu8

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