If you have time, could you try starting from Ubuntu 17.10, then upgrade
to 18.04 and see if you can reproduce the issue? You're welcome to use a
virtual machine to make testing easier.

** Tags added: bionic

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to gnome-software in Ubuntu.
https://bugs.launchpad.net/bugs/1756098

Title:
  Potential cache upgrade issue in 3.28 results in unable to install
  flatpakref due to remote already existing

Status in gnome-software package in Ubuntu:
  New

Bug description:
  What happened
  1) Open your browser, navigate to flathub.org, find an app and click to 
install it
  2) Open the resulting flatpakref in gnome-software.
  3) Notice how the app info is correctly displayed
  4) Try to click install, notice how now you get "cannot install source from 
https://dl.flathub.org/repo/: flatpak source flathub already exists"

  Note that I have 3.27.92 installed first and then upgraded to 3.28.
  After removing all installed apps and remotes I have not been able to
  reproduce the issue. It has been suggested that it is an issue in
  cache cleanup between versions - probably within ~/.cache/gnome-
  software/flatpak/

  Furthermore note the actual issue was likely fixed in 3.28, so this is
  upgrades from lower than 3.28 to 3.28 which will be affected by cache
  upgrade issues.

  I have reported the bug upstream here https://gitlab.gnome.org/GNOME
  /gnome-software/issues/328

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