I can confirm the bug, exact same behavior here. Upgraded from ubuntu
19.04 and same flickering effect.

 * I open the Tweak tool window
 * I try to hover one of the left menu's items -> it flickers, I can not manage 
to click on a menu item sucessfully
 * If I resize the window (I have  to make it larger so that the menu displays 
larger), then the menu works as expected and the flickering effect disappears - 
I have to do it everytime I launch the app, though.

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https://bugs.launchpad.net/bugs/1850103

Title:
  gnome-tweak-tool window keeps flickering on cursor hovering [Intel
  Penryn: Core 2 T6600]

Status in gnome-tweaks package in Ubuntu:
  New
Status in gtk+3.0 package in Ubuntu:
  New
Status in mesa package in Ubuntu:
  New
Status in mutter package in Ubuntu:
  New

Bug description:
  the gnome-tweak-tool window keeps flickering abnormally. this might be
  a bug as i have seen somebody else mention the issue somewhere in the
  internet.

  i do have the screencast of the phenomenon i can send it to you for
  the review of the problem i am facing.

  i am on ubuntu 19.10 system installed via bootable usb. before i had
  interrupted network upgrade of the system which was recovered via grub
  recovery mode. since i thought the flickering was due to all this, i
  fresh installed the system via bootable usb.

  still the problem is persistent and its abnormal irrespective of the 
animation button turned on or off.
  --- 
  ProblemType: Bug
  ApportVersion: 2.20.11-0ubuntu8
  Architecture: amd64
  CurrentDesktop: ubuntu:GNOME
  DistroRelease: Ubuntu 19.10
  InstallationDate: Installed on 2019-10-26 (1 days ago)
  InstallationMedia: Ubuntu 19.10 "Eoan Ermine" - Release amd64 (20191017)
  Package: mutter
  PackageArchitecture: all
  ProcVersionSignature: Ubuntu 5.3.0-19.20-generic 5.3.1
  Tags:  wayland-session eoan
  Uname: Linux 5.3.0-19-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups: adm cdrom dip lpadmin lxd plugdev sambashare sudo
  _MarkForUpload: True

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