(sigh)
I created a new user account on my old system. I can create new windowed apps. 
(webapp?)

I went back to my regular user account and moved ~/.config/chromium/
(514.3MB) to the desktop.

I could not open existing webapp window bookmarks; they don't even go to
the correct URL. There must be some stuff in there to link the bookmark
to the correct URL

SO I deleted the fresh .config/chromium folder and copied the desktop
one back and then

I used Chromium's Settings --> Advanced -- Reset Settings and
~/.config/chromium/ shrank the folder to 148MB

I can get the old bookmarks to open the correct URL but they still don't
open in a separate window.

I also notice that when I create webapp links Chromium creates a file on
my desktop called something like "~/Desktop/chrome-
kjbdgfilnfhdoflbpgamdcdgpehopbep-Default.desktop" I don't remember it
doing that before the recent update? If it did I must have deleted them
long ago.

I'm beginning to wonder if the cruft is in GNOME somewhere?

I need to do some work at the moment but I'll try some more things later

-- 
You received this bug notification because you are a member of Desktop
Packages, which is subscribed to chromium-browser in Ubuntu.
https://bugs.launchpad.net/bugs/1895199

Title:
  web apps no longer launch into separate windows

Status in chromium-browser package in Ubuntu:
  New

Bug description:
  Chromium-browser updated on my system yesterday and today I noticed
  that unlike the previous version (84.0.4147.105-0ubuntu0.18.04.1) when
  I click my "favorite" shortcuts for Google Messages, Google Contacts,
  Google Calendar, and a website for a local radio station, the "app"
  shortcuts no longer create separate independent windows, but instead
  open a new tab in a Chromium browser window.

  Strangely enough, the web app shortcut for GMail still opens correctly
  in a separate browser window.

  As I mentioned, this seems to be a regression from version
  84.0.4147.105-0ubuntu0.18.04.1 which got installed on my system
  yesterday.

  
  I am concerned because broken webapps is one of several features I will miss 
when I must upgrade this system from bionic. 

  (I have another system running 20.04 and of course the snap version of
  Chromium does not do web apps reliably nor does the snap version work
  with the KeePassXC plugin.)

  Just in case this is just an incompatibility with existing shortcuts,
  I just created a NEW shortcut for the radio station web site and the
  new shortcut exhibits the same behavior.

  ProblemType: Bug
  DistroRelease: Ubuntu 18.04
  Package: chromium-browser 85.0.4183.83-0ubuntu0.18.04.2
  ProcVersionSignature: Ubuntu 5.4.0-47.51~18.04.1-generic 5.4.55
  Uname: Linux 5.4.0-47-generic x86_64
  ApportVersion: 2.20.9-0ubuntu7.17
  Architecture: amd64
  CurrentDesktop: ubuntu:GNOME
  Date: Thu Sep 10 14:10:26 2020
  DetectedPlugins:
   
  InstallationDate: Installed on 2020-04-07 (156 days ago)
  InstallationMedia: Ubuntu 18.04.4 LTS "Bionic Beaver" - Release amd64 
(20200203.1)
  ProcEnviron:
   TERM=xterm-256color
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: chromium-browser
  UpgradeStatus: No upgrade log present (probably fresh install)
  modified.conffile..etc.default.chromium-browser: [deleted]

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