Hi Lahiru, Yes. I tested the second executable "ph.x". It runs just fine. In fact, I ran this executable separately and it took around 15 hour to finish. I also tried small examples that took only 3 minutes.
Thank you, On Tue, Jan 29, 2013 at 3:04 PM, Lahiru Gunathilake <[email protected]>wrote: > Hi Pedro, > > Can you please try to run your second executable only (ph.x) and see > whether it works fine with airavata ? > > Lahiru > > On Tue, Jan 29, 2013 at 3:48 PM, Pedro da Silveira <[email protected] > >wrote: > > > Hi Dev, > > > > I need a few tips here on how to run my workflow. > > > > I prepared a simple script to run my workflow, which has 4 inputs and > runs > > on Lonestar. > > In my script, I call two Fortran executable. It first runs "pw.x", later > > runs "ph.x" in this order. > > Unfortunately, as soon as the "pw.x" finishes, the ph.x does not start to > > run. I checked the output and nothing is written there. By looking on > Xbaya > > dashboard it just says that my job is still running. My wall time is of > 24h > > because the ph.x will require time to finish. > > I am using the user name ogce on Lonestar. > > > > Is this echo at end of my script correct? > > Should I point to the path where my output is located? > > Should I create a String Output variable on my AppService to receive this > > information back on the Xbaya? > > > > Script file name: executePhonon.sh > > > > ================================================= > > #ibrun $SCRATCH/pw.x -inp ./Pwscf_Input > ./Pwscf_Output; > > echo $* > > export APP_PATH=/scratch/01437/ogce/Vlab/Phonon/ > > > > cd $APP_PATH > > cp $1 . > > cp $2 . > > cp $3 . > > cp $4 . > > ####ibrun > > /scratch/01437/ogce/Vlab/pw.x < Pwscf_Input >> $APP_PATH/Pwscf_Output; > > > > /scratch/01437/ogce/Vlab/ph.x < Phonon_Input >> $APP_PATH/Phonon_Output ; > > > > echo Pwscf_Output=$APP_PATH/Pwscf_Output > > echo Phonon_Output=$APP_PATH/Phonon_Output > > =================================================== > > > > Any advice on how to have this script running on Lonestart is welcome. > > > > Thank you, > > > > Pedro da Silveira > > > > > > -- > System Analyst Programmer > PTI Lab > Indiana University >
