Hi Eric, The next thing will be to look at how output staging is done. We have been doing lot of testing and fixing lately. Before we get on a interactive debugging session, can you please take a git pull of both airavata and pga and deploy them? For Airavata you will need to do a mvn build and use the updated package. For PGA, after a git pull, do a ‘composer update’.
Suresh > On Mar 17, 2016, at 10:42 AM, Eric Kuyt <[email protected]> wrote: > > Hi All, > > tomorrow i have some time to take look at airavata again. > > Now I configured email in SGE this and made sure the mail is read I get extra > status info. > > [INFO] expId: test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23, > processId: PROCESS_eab91edc-e919-4d4d-b8fc-36efb1c82ecf, taskId: > TASK_b33c3585-e605-410d-86b0-1238ce4ab28f, type: JOB_SUBMISSION:- Task status > changed COMPLETED -> COMPLETED > [INFO] Publishing status to rabbitmq... > [INFO] expId: test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23, > processId: PROCESS_eab91edc-e919-4d4d-b8fc-36efb1c82ecf :- Process status > changed EXECUTING -> MONITORING > [INFO] Publishing status to rabbitmq... > [INFO] expId: test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23, > processId: PROCESS_eab91edc-e919-4d4d-b8fc-36efb1c82ecf, taskId: > TASK_4513cb0c-c8ff-414a-b5b9-daf12040f478, type: MONITORING:- Task status > changed CREATED -> EXECUTING > [INFO] expId: test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23, > processId: PROCESS_eab91edc-e919-4d4d-b8fc-36efb1c82ecf :- Process status > changed event received for status MONITORING > [INFO] Publishing status to rabbitmq... > [INFO] [EJM]: Added monitor Id : 92 to email based monitor map > [INFO] Airavata retrieved project with project Id : default > [INFO] Airavata retrieved job models for experiment with experiment id : > test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23 > [INFO] [EJM]: 1 job/s in job monitor map > [INFO] [EJM]: Retrieving unseen emails > [INFO] [EJM]: No new email messages > [INFO] Airavata retrieved project with project Id : default > [INFO] Airavata retrieved job models for experiment with experiment id : > test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23 > [INFO] Airavata retrieved project with project Id : default > [INFO] Airavata retrieved job models for experiment with experiment id : > test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23 > [INFO] [EJM]: 1 job/s in job monitor map > [INFO] [EJM]: Retrieving unseen emails > [INFO] Airavata retrieved project with project Id : default > [INFO] Airavata retrieved job models for experiment with experiment id : > test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23 > [INFO] [EJM]: 2 new email/s received > [INFO] [EJM]: Job Active email received, JobName : A1753650831, JobId : 92 > [INFO] [EJM]: Publishing status changes to amqp. JobName : A1753650831, JobId > : 92 > [INFO] Publishing status to rabbitmq... > [INFO] [EJM]: Job Complete email received , removed job from job monitoring. > JobName : A1753650831, JobId : 92 > [INFO] [EJM]: Publishing status changes to amqp. JobName : A1753650831, JobId > : 92 > [INFO] Publishing status to rabbitmq... > [INFO] [EJM]: Calling Out Handler chain of JobName : A1753650831, JobId : 92 > [INFO] expId: test_experiment_11_b078f237-c62e-4baf-8d5d-44bf1cd6df23, > processId: PROCESS_eab91edc-e919-4d4d-b8fc-36efb1c82ecf, taskId: > TASK_4513cb0c-c8ff-414a-b5b9-daf12040f478, type: MONITORING:- Task status > changed EXECUTING -> COMPLETED > [INFO] Publishing status to rabbitmq... > > But the experiment, containing only one completed job keeps being at > executing state. Does anyone know why the experiment doesn't gi in Completed > state? > > > Thanks, > > Eric > > -- > Central Veterinary Institute of Wageningen UR (CVI) > Department of Infection Biology > PO box 65, 8200 AB Lelystad, NL > Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad > > Tel: +31-(0)320-293391 <> > Fax: +31-(0)320-238153 <> > E-mail: [email protected] <mailto:[email protected]> > Web: http://www.cvi.wur.nl <http://www.cvi.wur.nl/>
