Nice work Jeff. Briefly skimming through the code, I see you are writing the tool from a general sense and not OpenMM specific, great. I was able to follow your instructions and start the web interface, very slick indeed.
Suresh > On Apr 11, 2016, at 3:12 PM, Jeffery Kinnison <[email protected]> > wrote: > > Hi all, > > Sorry for the long silence, my semester hit peak workload about the same time > as the proposal deadline. > > I've written a small POC in Python for parallel data collection and > streaming, available at https://github.com/jeffkinnison/simstream > <https://github.com/jeffkinnison/simstream>. The current idea is to spin up a > small server > alongside a job, and within the server to implement a REST API for > retrieving collected data. Currently, event monitoring and handling are not > implemented, but I'm planing on working on that this week. > > Any comments or suggestions would be much appreciated. > > Best, > Jeff K. > > On Fri, Mar 25, 2016 at 12:46 PM, Sandra Gesing <[email protected] > <mailto:[email protected]>> wrote: > Great! > > Best, > Sandra > > ------------------------------------------------------------------------------------------------------------ > Sandra Gesing > Research Assistant Professor, Department of Computer Science and Engineering > Computational Scientist, Center for Research Computing > University of Notre Dame > http://www3.nd.edu/~sgesing <http://www3.nd.edu/~sgesing> > ------------------------------------------------------------------------------------------------------------ > > On Fri, Mar 25, 2016 at 12:45 PM, Jeffery Kinnison > <[email protected] <mailto:[email protected]>> wrote: > Thank you, again, for all of your help. I have submitted the proposal and > will update the wiki to reflect the final version. > > Best, > Jeff K. > > On Fri, Mar 25, 2016 at 12:34 PM, Pierce, Marlon <[email protected] > <mailto:[email protected]>> wrote: > Agreed, looks good. Please update your submission. > > From: Suresh Marru <[email protected] <mailto:[email protected]>> > Reply-To: "[email protected] <mailto:[email protected]>" > <[email protected] <mailto:[email protected]>> > Date: Friday, March 25, 2016 at 12:32 PM > To: Airavata Dev <[email protected] <mailto:[email protected]>> > > Subject: Re: [GSoC Proposal] In-Situ Simulation Monitoring and Analysis Using > Apache Airavata > > You did a great uplift of the proposal, great job.I suggest submit a final > copy immediately. > > Suresh > >> On Mar 25, 2016, at 12:28 PM, Jeffery Kinnison <[email protected] >> <mailto:[email protected]>> wrote: >> >> Thank you all for your feedback. I have addressed the many fantastic >> suggestions and believe that the proposal is just about complete in terms of >> content. >> >> If the team could review the updated proposal, I would much appreciate it. >> >> https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6BNMzNA/edit?usp=sharing >> >> <https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6BNMzNA/edit?usp=sharing> >> >> Best, >> Jeff K. >> >> On Thu, Mar 24, 2016 at 5:47 AM, Sandra Gesing <[email protected] >> <mailto:[email protected]>> wrote: >> Hi Jeff, >> >> I think a graphical sketch of the architecture of the services would be a >> great addition to your proposal. >> >> Thanks, >> Sandra >> >> ------------------------------------------------------------------------------------------------------------ >> Sandra Gesing >> Research Assistant Professor, Department of Computer Science and Engineering >> Computational Scientist, Center for Research Computing >> University of Notre Dame >> http://www3.nd.edu/~sgesing <http://www3.nd.edu/~sgesing> >> ------------------------------------------------------------------------------------------------------------ >> >> On Wed, Mar 23, 2016 at 1:50 PM, Miller, Mark <[email protected] >> <mailto:[email protected]>> wrote: >> I like this proposal also very much, and agree with what Sandy said as well. >> >> >> >> Mark >> >> >> >> <> >> From: Sandra Gesing [mailto:[email protected] >> <mailto:[email protected]>] >> Sent: Tuesday, March 22, 2016 6:12 PM >> To: [email protected] <mailto:[email protected]> >> Subject: Re: [GSoC Proposal] In-Situ Simulation Monitoring and Analysis >> Using Apache Airavata >> >> >> >> Hi Jeff, >> >> >> the proposal looks already excellent. I think it would be beneficial to have >> the feature in Airavata that users can directly search for certain terms in >> a log file and intermediate results additionally to see the whole log file >> and intermediate values. >> >> Thanks, >> >> Sandra >> >> >> >> ------------------------------------------------------------------------------------------------------------ >> Sandra Gesing >> >> Research Assistant Professor, Department of Computer Science and Engineering >> >> Computational Scientist, Center for Research Computing >> >> University of Notre Dame >> http://www3.nd.edu/~sgesing <http://www3.nd.edu/~sgesing> >> ------------------------------------------------------------------------------------------------------------ >> >> >> >> On Tue, Mar 22, 2016 at 8:03 PM, Jeffery Kinnison >> <[email protected] <mailto:[email protected]>> wrote: >> >> Hello Dev Team, >> >> I have created a draft of my GSoC proposal and made it available as at the >> link below. >> >> >> https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6BNMzNA/edit?usp=sharing >> >> <https://docs.google.com/document/d/16BCTV__tA9h2Pnx1annaBIJaU2Jmma1ayTHV6BNMzNA/edit?usp=sharing> >> I would appreciate any comments to improve this proposal. >> >> Best, >> >> Jeff Kinnison >> >> >> >> >> > > > >
