Hi Lahiru,
Token is not generated when I click the button, it is just blank. Regards Karan ________________________________ From: Lahiru Jayathilake <[email protected]> Sent: Monday, July 30, 2018 2:00 AM To: Kotabagi, Karan Cc: [email protected] Subject: Re: Installation of Apache Airavata Hi Karan, What do you mean by you are not able to generate the token? Is “Generate a new token” button is disabled? or is there some kind of an error? Regards, Lahiru On Jul 29, 2018, at 1:31 PM, Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Lahiru/Yasas, After running the helix installation, I was following the video that you have sent to add the compute resource. After setting up the Application Interfaces I am not able to generate the token (in the credential store tab) as attached in the screenshot I believe there is some issue with the credential store module. Can you please look into it? Regards Karan ________________________________ From: Kotabagi, Karan <[email protected]<mailto:[email protected]>> Sent: Saturday, July 28, 2018 12:11 PM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Lahiru, Thanks! Will let you know for any of the clarifications. Regards Karan ________________________________ From: Lahiru Jayathilake <[email protected]<mailto:[email protected]>> Sent: Saturday, July 28, 2018 11:33 AM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Karan, To add Helix related components run the helix.yml ansible playbook. I have given access for the two videos, setting up compute resources. Let me know if you have anything to be clarified. Regards, Lahiru On 28 July 2018 at 20:32, Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Yasas, Thanks! This worked fine, although there is an error message every time I login as attached, after reload it works fine. Can you please advise if you have the further configuration steps to include the helix components and set-up the compute resources and other configurations if necessary? Regards Karan ________________________________ From: Yasas Gunarathne <[email protected]<mailto:[email protected]>> Sent: Saturday, July 28, 2018 7:43 AM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Karan, I tried installing Airavata using the staging branch and was able to recreate your issue. Please follow the below steps to fix it. * Stop all running instances with /home/pga/master-deployment/api-orchestrator/apache-airavata-server-0.17-SNAPSHOT/bin/airavata-server-stop.sh -f api-orch * Drop app_catalog database and recreate it with CREATE DATABASE app_catalog; * Configure KeyCloak if you haven't done it after creating databases. Since, you have already installed PGA, the auth_client_secret (see image) can be set directly to Laravel config at /var/www/portals/default/app/config/pga_config.php * ( Run php artisan cache:clear to reload Laravel configurations) <keycloak.png> * Goto /home/pga/master-deployment/api-orchestrator/apache-airavata-server-0.17-SNAPSHOT/bin/database_scripts and open appcatalog-mysql.sql * Search for USER_COMPUTE_RESOURCE_PREFERENCE table and replace the line SCRATCH_LOCATION varchar(255) NOT NULL DEFAULT NULL, with SCRATCH_LOCATION varchar(255) DEFAULT NULL, * Start servers again with /home/pga/master-deployment/api-orchestrator/apache-airavata-server-0.17-SNAPSHOT/bin/airavata-server-start.sh -d api-orch Please note that this is just a workaround and it needs to be fixed. Let me know if anything needs to be explained. Regards On Sat, Jul 28, 2018 at 10:51 AM Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Yasas, As discussed please find the attached files. Regards Karan ________________________________ From: Kotabagi, Karan <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 11:41 PM To: Lahiru Jayathilake Cc: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Lahiru, Please find the terminal output in the file attached. Regards Karan ________________________________ From: Lahiru Jayathilake <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 11:19 PM To: Kotabagi, Karan Subject: Re: Installation of Apache Airavata Hi Karan, According to the banner the Airavata server is not active. Can you share the terminal output running the command, ps -ef | grep airavata gfac is not needed if you are going with the helix-integration (helix-controller, helix-participant, helix-pre-wm, and helix-post-wm) if not you need it as well. Regards, On 28 July 2018 at 06:05, Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Yasas / Lahiru, After the set-up is completed from the guide the pga portal starts up but I am unable to login with the default-admin and I have attached the screenshot. I have followed these troubleshooting steps: 1> Check if the service httpd is running (It was active and running). 2> . Started the airavata server at the following path in VM: 1. A) go to /home/pga/master-deployment/api-orchestrator/apache-airavata-server-<version>-SNAPSHOT/bin and run ./airavata-server-start.sh -d api-orch Although I was not able to find the gfac-instance to start it with "./airavata-server-start.sh -d gfac", I believe that gfac won't be there with the staging? Please can you further advise if I have to do any more configuration to successfully login and set the pga configuration? Regards Karan ________________________________ From: Kotabagi, Karan <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 7:53 PM To: [email protected]<mailto:[email protected]> Cc: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Lahiru, Thanks, I was able to run it with the modifications suggested by Yasas. I believe it should be fine? Regards Karan ________________________________ From: Lahiru Jayathilake <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 6:57 PM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Karan, You can fix it adding the following code block before line number 120 in /ansible/roles/database/tasks/main.yml - name: update facts setup: delegate_to: '{{item}}' delegate_facts: yes when: hostvars[item]["ansible_default_ipv4"] is not defined with_items: - '{{groups["api-orch"]}}' - "localhost" become: sudo tags: - always Regards, Lahiru On 28 July 2018 at 03:30, Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Yasas, Thanks, it worked now, I will continue with the set-up. Regards Karan ________________________________ From: Yasas Gunarathne <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 5:38 PM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Karan, I think for the moment you can modify line number 121 and 128 at dev-tools/ansible/roles/database/tasks/main.yml as follows and continue. mysql_user: name="{{ db_user }}" password="{{ db_password }}" host="{{ item }}" Regards On Sat, Jul 28, 2018 at 2:06 AM Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: Hi Yasas, I have attached the result of the "ip r"(from VM) in the screenshot. Can you please check and advise, if it is Ok? Also please note that this is the error I am facing with the staging branch, this had worked in the master branch. Regards Karan ________________________________ From: Yasas Gunarathne <[email protected]<mailto:[email protected]>> Sent: Friday, July 27, 2018 4:05 PM To: [email protected]<mailto:[email protected]> Subject: Re: Installation of Apache Airavata Hi Karan, If you have no default routes defined for your IPv4 or IPv6 addresses ansible_default_ipv4 will stay undefined. Can you check this with, ip r and confirm? Regards On Sat, Jul 28, 2018 at 1:02 AM Kotabagi, Karan <[email protected]<mailto:[email protected]>> wrote: *************Re-sending the mail with the attached error screenshot***************** Hi All, I working to set-up the Apache Airavata locally using a CentOS VM. I have set-up using the guide at the link: https://docs.google.com/document/d/1dFhajiYlPtNymIKbMvCXeLivLHujLjvE107QyUDEgdA/edit?usp=sharing for the master branch and completed the set-up but was getting the error with the pga not starting up at the port 8008. Since, in order to debug or test the new adapter locally I was advised by Dimuthu to use the staging branch and use some settings to debug the pga client to start up. At the stage of setting up the database using the ansible with the following command: ansible-playbook -i inventories/standalone database.yml (Error Screenshot as attached in error.png) Although, this was successful with the master branch. I am getting this error with the staging branch and I have checked the quotes message in the error and I believe the error is not related to this? Please provide your inputs to resolve this issue and move ahead with the set-up. Regards Karan -- Yasas Gunarathne Undergraduate at Department of Computer Science and Engineering Faculty of Engineering - University of Moratuwa Sri Lanka LinkedIn<https://www.linkedin.com/in/yasasgunarathne/> | GitHub<https://github.com/yasgun> | Mobile : +94 77 4893616 -- Yasas Gunarathne Undergraduate at Department of Computer Science and Engineering Faculty of Engineering - University of Moratuwa Sri Lanka LinkedIn<https://www.linkedin.com/in/yasasgunarathne/> | GitHub<https://github.com/yasgun> | Mobile : +94 77 4893616 -- Lahiru Jayathilake Department of Computer Science and Engineering, Faculty of Engineering, University of Moratuwa [https://docs.google.com/uc?id=0B5tEBQ-dYBjOQndlTjdfUUNzTXM&export=download]<https://lk.linkedin.com/in/lahirujayathilake> -- Lahiru Jayathilake Department of Computer Science and Engineering, Faculty of Engineering, University of Moratuwa [https://docs.google.com/uc?id=0B5tEBQ-dYBjOQndlTjdfUUNzTXM&export=download]<https://lk.linkedin.com/in/lahirujayathilake> -- Yasas Gunarathne Undergraduate at Department of Computer Science and Engineering Faculty of Engineering - University of Moratuwa Sri Lanka LinkedIn<https://www.linkedin.com/in/yasasgunarathne/> | GitHub<https://github.com/yasgun> | Mobile : +94 77 4893616 -- Lahiru Jayathilake Department of Computer Science and Engineering, Faculty of Engineering, University of Moratuwa [https://docs.google.com/uc?id=0B5tEBQ-dYBjOQndlTjdfUUNzTXM&export=download]<https://lk.linkedin.com/in/lahirujayathilake> <credential_Store.png>
