Wes McKinney created ARROW-2247:
-----------------------------------
Summary: [Python] Statically-linking boost_regex in both libarrow
and libparquet results in segfault
Key: ARROW-2247
URL: https://issues.apache.org/jira/browse/ARROW-2247
Project: Apache Arrow
Issue Type: Bug
Reporter: Wes McKinney
This is a backtrace loading {{libparquet.so}} on Ubuntu 14.04 using boost
1.66.1 from conda-forge. Both libarrow and libparquet contain {{boost_regex}}
statically linked.
{code}
In [1]: import ctypes
In [2]: ctypes.CDLL('libparquet.so')
Program received signal SIGSEGV, Segmentation fault.
0x00007fffed4ad3fb in std::basic_string<char, std::char_traits<char>,
std::allocator<char> >::basic_string(std::string const&) () from
/usr/lib/x86_64-linux-gnu/libstdc++.so.6
(gdb) bt
#0 0x00007fffed4ad3fb in std::basic_string<char, std::char_traits<char>,
std::allocator<char> >::basic_string(std::string const&) () from
/usr/lib/x86_64-linux-gnu/libstdc++.so.6
#1 0x00007fffed74c1fc in
boost::re_detail_106600::cpp_regex_traits_char_layer<char>::init() ()
from /home/wesm/cpp-toolchain/lib/libboost_regex.so.1.66.0
#2 0x00007fffed794803 in
boost::object_cache<boost::re_detail_106600::cpp_regex_traits_base<char>,
boost::re_detail_106600::cpp_regex_traits_implementation<char>
>::do_get(boost::re_detail_106600::cpp_regex_traits_base<char> const&, unsigned
long) () from /home/wesm/cpp-toolchain/lib/libboost_regex.so.1.66.0
#3 0x00007fffed79e62b in boost::basic_regex<char, boost::regex_traits<char,
boost::cpp_regex_traits<char> > >::do_assign(char const*, char const*, unsigned
int) () from /home/wesm/cpp-toolchain/lib/libboost_regex.so.1.66.0
#4 0x00007fffee58561b in boost::basic_regex<char, boost::regex_traits<char,
boost::cpp_regex_traits<char> > >::assign (this=0x7fffffff3780,
p1=0x7fffee600602
"(.*?)\\s*(?:(version\\s*(?:([^(]*?)\\s*(?:\\(\\s*build\\s*([^)]*?)\\s*\\))?)?)?)",
p2=0x7fffee60064a "", f=0) at
/home/wesm/cpp-toolchain/include/boost/regex/v4/basic_regex.hpp:381
#5 0x00007fffee5855a7 in boost::basic_regex<char, boost::regex_traits<char,
boost::cpp_regex_traits<char> > >::assign (this=0x7fffffff3780,
p=0x7fffee600602
"(.*?)\\s*(?:(version\\s*(?:([^(]*?)\\s*(?:\\(\\s*build\\s*([^)]*?)\\s*\\))?)?)?)",
f=0)
at /home/wesm/cpp-toolchain/include/boost/regex/v4/basic_regex.hpp:366
#6 0x00007fffee5683f3 in boost::basic_regex<char, boost::regex_traits<char,
boost::cpp_regex_traits<char> > >::basic_regex (this=0x7fffffff3780,
p=0x7fffee600602
"(.*?)\\s*(?:(version\\s*(?:([^(]*?)\\s*(?:\\(\\s*build\\s*([^)]*?)\\s*\\))?)?)?)",
f=0)
at /home/wesm/cpp-toolchain/include/boost/regex/v4/basic_regex.hpp:335
#7 0x00007fffee5656d0 in parquet::ApplicationVersion::ApplicationVersion (
Python Exception <class 'gdb.error'> There is no member named _M_dataplus.:
this=0x7fffee8f1fb8
<parquet::ApplicationVersion::PARQUET_251_FIXED_VERSION>, created_by=)
at ../src/parquet/metadata.cc:452
#8 0x00007fffee41c271 in __cxx_global_var_init.1(void) () at
../src/parquet/metadata.cc:35
#9 0x00007fffee41c44e in _GLOBAL__sub_I_metadata.tmp.wesm_desktop.4838.ii ()
from /home/wesm/local/lib/libparquet.so
#10 0x00007ffff7dea1da in call_init (l=<optimized out>, argc=argc@entry=2,
argv=argv@entry=0x7fffffff5d88,
env=env@entry=0x7fffffff5da0) at dl-init.c:78
#11 0x00007ffff7dea2c3 in call_init (env=<optimized out>, argv=<optimized out>,
argc=<optimized out>,
l=<optimized out>) at dl-init.c:36
#12 _dl_init (main_map=main_map@entry=0x13fb220, argc=2, argv=0x7fffffff5d88,
env=0x7fffffff5da0)
at dl-init.c:126
{code}
This seems to be caused by static initializations in libparquet:
https://github.com/apache/parquet-cpp/blob/master/src/parquet/metadata.cc#L34
We should see if removing these static initializations makes the problem go
away. If not, then statically-linking boost_regex in both libraries is not
advisable.
For this reason and more, I really wish that Arrow and Parquet shared a common
build system and monorepo structure -- it would make handling these toolchain
and build-related issues much simpler.
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