Mitar created ARROW-2269:
----------------------------
Summary: Cannot build bdist_wheel for Python
Key: ARROW-2269
URL: https://issues.apache.org/jira/browse/ARROW-2269
Project: Apache Arrow
Issue Type: Bug
Components: Packaging
Affects Versions: 0.9.0
Reporter: Mitar
I am trying current master.
I ran:
{{python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet
--with-plasma --bundle-arrow-cpp bdist_wheel }}
Output:
{{running build_ext creating build creating build/temp.linux-x86_64-3.6 --
Runnning cmake for pyarrow cmake
-DPYTHON_EXECUTABLE=.../Temp/arrow/pyarrow/bin/python
-DPYARROW_BUILD_PARQUET=on -DPYARROW_BOOST_USE_SHARED=on
-DPYARROW_BUILD_PLASMA=on -DPYARROW_BUNDLE_ARROW_CPP=ON
-DCMAKE_BUILD_TYPE=release .../Temp/arrow/arrow/python -- The C compiler
identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 --
Check for working C compiler: /usr/bin/cc -- Check for working C compiler:
/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler
ABI info - done -- Detecting C compile features -- Detecting C compile features
- done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX
compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting
CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX
compile features - done INFOCompiler command: /usr/bin/c++ INFOCompiler
version: Using built-in specs. COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target:
x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu
7.2.0-8ubuntu3.2' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs
--enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr
--with-gcc-major-version-only --program-suffix=-7
--program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie
--with-system-zlib --with-target-system-zlib --enable-objc-gc=auto
--enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64
--with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic
--enable-offload-targets=nvptx-none --without-cuda-driver
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu Thread model: posix gcc version 7.2.0 (Ubuntu
7.2.0-8ubuntu3.2) INFOCompiler id: GNU Selected compiler gcc 7.2.0 --
Performing Test CXX_SUPPORTS_SSE3 -- Performing Test CXX_SUPPORTS_SSE3 -
Success -- Performing Test CXX_SUPPORTS_ALTIVEC -- Performing Test
CXX_SUPPORTS_ALTIVEC - Failed Configured for RELEASE build (set with cmake
-DCMAKE_BUILD_TYPE=\{release,debug,...}) -- Build Type: RELEASE -- Build output
directory: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6/release/ --
Found PythonInterp: .../Temp/arrow/pyarrow/bin/python (found version "3.6.3")
-- Searching for Python libs in
.../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
-- Looking for python3.6m -- Found Python lib
/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so -- Found
PythonLibs: /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so --
Found NumPy: version "1.14.1"
.../Temp/arrow/pyarrow/lib/python3.6/site-packages/numpy/core/include --
Searching for Python libs in
.../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
-- Looking for python3.6m -- Found Python lib
/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so -- Found
PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module
'arrow' -- Found arrow, version 0.9.0-SNAPSHOT -- Arrow ABI version: 0.0.0 --
Arrow SO version: 0 -- Found the Arrow core library:
.../Temp/arrow/dist/lib/libarrow.so -- Found the Arrow Python library:
.../Temp/arrow/dist/lib/libarrow_python.so -- Boost version: 1.63.0 -- Found
the following Boost libraries: -- system -- filesystem -- regex Added shared
library dependency arrow: .../Temp/arrow/dist/lib/libarrow.so Added shared
library dependency arrow_python: .../Temp/arrow/dist/lib/libarrow_python.so --
Found the Parquet library: .../Temp/arrow/dist/lib/libparquet.so Added shared
library dependency parquet: .../Temp/arrow/dist/lib/libparquet.so -- Checking
for module 'plasma' -- Found plasma, version -- Plasma ABI version: 0.0.0 --
Plasma SO version: 0 -- Found the Plasma core library:
.../Temp/arrow/dist/lib/libplasma.so -- Found Plasma executable:
.../Temp/arrow/dist/bin/plasma_store Added shared library dependency libplasma:
.../Temp/arrow/dist/lib/libplasma.so -- Configuring done -- Generating done --
Build files have been written to:
.../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6 -- Finished cmake for
pyarrow -- Running cmake --build for pyarrow make Scanning dependencies of
target lib_pyx [ 11%] Compiling Cython CXX source for lib... [ 11%] Built
target lib_pyx Scanning dependencies of target lib [ 22%] Building CXX object
CMakeFiles/lib.dir/lib.cxx.o [ 33%] Linking CXX shared module
release/lib.cpython-36m-x86_64-linux-gnu.so [ 33%] Built target lib Scanning
dependencies of target _parquet_pyx [ 44%] Compiling Cython CXX source for
_parquet... [ 44%] Built target _parquet_pyx Scanning dependencies of target
_parquet [ 55%] Building CXX object CMakeFiles/_parquet.dir/_parquet.cxx.o [
66%] Linking CXX shared module release/_parquet.cpython-36m-x86_64-linux-gnu.so
[ 66%] Built target _parquet Scanning dependencies of target plasma_pyx [ 77%]
Compiling Cython CXX source for plasma... [ 77%] Built target plasma_pyx
Scanning dependencies of target plasma [ 88%] Building CXX object
CMakeFiles/plasma.dir/plasma.cxx.o [100%] Linking CXX shared module
release/plasma.cpython-36m-x86_64-linux-gnu.so [100%] Built target plasma --
Finished cmake --build for pyarrow
.../Temp/arrow/arrow/python/build/lib.linux-x86_64-3.6/pyarrow
['release/libarrow.so.0.0.0', 'release/libarrow.so.0', 'release/libarrow.so']
release/libarrow.so.0.0.0 ['release/libarrow_python.so.0.0.0',
'release/libarrow_python.so.0', 'release/libarrow_python.so']
release/libarrow_python.so.0.0.0 ['release/libplasma.so.0.0.0',
'release/libplasma.so.0', 'release/libplasma.so'] release/libplasma.so.0.0.0
['release/libparquet.so.1.3.2', 'release/libparquet.so.1',
'release/libparquet.so'] release/libparquet.so.1.3.2 }}{{}}
And after that it crashes because it cannot find {{arrow_boost_filesystem}} in
{{build_prefix}} in {{_move_shared_libs_unix}} call which makes {{libs}}
variable there empty.
If I do:
{{$ find . -name *.so ./build/lib.linux-x86_64-3.6/pyarrow/libparquet.so
./build/lib.linux-x86_64-3.6/pyarrow/libplasma.so
./build/lib.linux-x86_64-3.6/pyarrow/libarrow.so
./build/lib.linux-x86_64-3.6/pyarrow/libarrow_python.so
./build/temp.linux-x86_64-3.6/release/_parquet.cpython-36m-x86_64-linux-gnu.so
./build/temp.linux-x86_64-3.6/release/libparquet.so
./build/temp.linux-x86_64-3.6/release/libboost_filesystem.so
./build/temp.linux-x86_64-3.6/release/libplasma.so
./build/temp.linux-x86_64-3.6/release/libarrow.so
./build/temp.linux-x86_64-3.6/release/libboost_system.so
./build/temp.linux-x86_64-3.6/release/lib.cpython-36m-x86_64-linux-gnu.so
./build/temp.linux-x86_64-3.6/release/libboost_regex.so
./build/temp.linux-x86_64-3.6/release/libarrow_python.so
./build/temp.linux-x86_64-3.6/release/plasma.cpython-36m-x86_64-linux-gnu.so
./pyarrow/_parquet.cpython-36m-x86_64-linux-gnu.so
./pyarrow/lib.cpython-36m-x86_64-linux-gnu.so
./pyarrow/plasma.cpython-36m-x86_64-linux-gnu.so }}{{}}
So it seems the issue is that the filename is {{libboost_filesystem.so}}, but
it is trying to move {{libarrow_boost_filesystem.so}}?
Changing lines in {{setup.py}} to:
{{ move_shared_libs(build_prefix, build_lib, "boost_filesystem")
move_shared_libs(build_prefix, build_lib, "boost_system")
move_shared_libs(build_prefix, build_lib, "boost_regex") }}
seems to make it build.
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